Camellia sinensis (tea plant): 114322586
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Entry
114322586 CDS
T07364
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03013
Nucleocytoplasmic transport
csin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114322586
03015 mRNA surveillance pathway
114322586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114322586
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114322586
mRNA cycle factors
P-body specific factors
114322586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
114322586
NCBI-ProteinID:
XP_028125725
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MDHPEDECRVRGEHHGKQDDEEAVARHEEFKKSMEAKLALRQNNLNPERPDLGFFRTLDS
SIKRNTAVIKKLKQINEEQRESLMDELRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPGKSGDDLEADKNLRAMKKRSTLKLILELYFVGVIED
SGIFINIIKDLTSIEHLKDRDATQTNLSLLASFVRQGRAFLGLPQSGQEILEEFFKGLNI
TADQKKFFRKALNTYYDAAAELLHSEHSSLRQMEHENAKILNAKGELSDENASSYEKLRK
SYDHLYRGVSALAEALDMDPPAMPEDGHTTRVTTGEDTSSPGAGKDSSVLEAMWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKVNEQSPKTQEQPSDLAPESDQGQMAIPDSAEVSTDS
GTLQEAKNEKGKDKDEKDKEKAKDPDKEKGKDKDAERKGEIEKEKIKGLEGTNLDGLLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKKLVKALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPTGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEPYLLKCFMKVH
KGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLALELNDYGMQQRHLAHMRLLGE
LYNYEQLDSSVIFDTLYLILVFGHGTAEQDVLDPPEDCFRIRMVITLLETCGHYFDRGSS
KRKLDRFLINFQRYILSKGPLPLDIEFDLQDLFVDLRPKMTRYSSIEEVNAVLIELEEHE
RTVLTDKANSEKHSDTEKPPSRSTSGSVSVNGQNHENGIEGNGGVHEAMADSDSDSGSGT
LDPEGHEDEEDLDEENHDDACDSDDDYDDAGGPASDEDEEVRVRQKVTHMDPQEEAEFDK
EFRALMQESLDSRKLELRARPTLNMMIPMNVFEGPTKDHHGRGFEGESGDETLDEEAGGS
KEVRVKVLVKRGNKQQTKQMSIPRDCSLVQSTKQKEAAELEEKQNIKRLVLEYNDREEEE
LNGFGTQPTSWMQSGGSRVSNRGHTWEGHGGGRGTGSRHRHQHYYSGGGIYYNSRRK
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccctgaggatgaatgtcgggtcagaggtgaacatcatggaaaacaagatgat
gaggaagctgttgcacgtcatgaggaattcaaaaagtcaatggaggcaaaactggctctt
cgtcagaataacttgaaccctgaaaggcctgacttgggttttttcaggacattagattcc
agcattaagcgcaacactgcagttattaagaaacttaagcagattaatgaagagcagcgg
gaaagtttgatggatgagttgcggggtgtcaacttaagcaaatttgttagcgaagcagtg
acagctatttgtgatgccaagcttagatcttcagacatacaagctgcagttcagatctgc
tctttgcttcatcaaagatacaaagacttctcaccaagtttggttcagggcctcttgaaa
gtcttttttcctgggaagtctggagatgacttggaggcagacaagaatttaagagccatg
aagaagcgcagcactttaaagcttattttggaactctactttgttggagttatagaagac
agtggtatttttattaacatcattaaggatcttactagcatagagcatctaaaggaccga
gatgcaactcagacgaatctgtctcttcttgctagttttgtacgacaagggagagctttc
ctaggtcttccacagtctggacaagaaattcttgaagagttttttaagggccttaatatc
acggcagatcagaagaaatttttcaggaaggcattgaatacatattatgatgcagcagca
gagctacttcactcagagcatagttcacttcgccaaatggagcatgagaatgcaaagatt
ttgaatgcaaaaggtgagctgagtgatgaaaatgcctcttcatatgaaaagctgcgaaaa
tcttatgaccatctgtatcgtggtgtctcagcgttagctgaagctcttgacatggatcct
ccagcgatgccagaggacggtcacacaactagggtcacaaccggggaggacacatcatct
cctggtgctggaaaagattcttctgttcttgaagcaatgtgggatgatgaagatacaaga
gctttttatgaatgcttaccggatctcagagcatttgttcctgcagtcttactgggagaa
gcagaacccaaggtgaatgagcaatctccaaagacacaagagcaaccatctgatttggca
cctgaatcagaccaaggtcagatggctatcccagattctgcagaggtttctacagattct
ggaactttgcaggaggcgaaaaatgagaaaggtaaagataaagatgaaaaagataaagaa
aaggccaaagatcctgacaaagagaaaggaaaagacaaggatgctgaacgaaaaggagaa
attgagaaggagaaaattaaaggtcttgaaggaacaaatttggatggtctactgcagagg
cttcccggttgtgtgagccgtgatctaattgatcagttgactgtggagttttgttattta
aattcgaaatcaaaccgtaaaaagcttgtgaaggctttgtttaatgtccccaggacatct
ctagaactgctgccatactattcacgcatggttgccacactgtcaacttgtatgaaggat
gtatcttccatgctcttgcagttgttggaggaagagttcaactttttgataaataagaag
gatcaaatgaacattgaaacaaagatcaggaatattcggtttattggggaactctgcaag
ttcaaaattgctccaactggccttgtttttagttgtttgaaggcttgtttagatgatttt
actcatcataatattgatgttgcctgcaatcttcttgagacatgtggccgttttctttac
cggtcccctgaaactactgtacgcatggctaacatgttggagatattgatgcgtttaaaa
aatgtaaaaaatttggatcctcgtcacagcacactagtagaaaatgcttactacctgtgc
aaacctccagaacgatctgctcgagtctctaaagttcgtccaccgttgcatcagtatatc
agaaaactacttttctcagacctcgataagtcttccattgagcatgtgctgagacaactt
cgtaagctaccatggagtgaatgcgagccctaccttctaaaatgctttatgaaggttcac
aagggaaagtatggtcagattcacttgattgcttcacttactgctggcttgagtcgctat
catgatgaatttgcagttgctgttgttgatgaggtcttggaggaaataaggctggcgcta
gagttgaatgactatgggatgcagcaacgacaccttgcccacatgcggctcttaggggag
ctatacaactatgaacaattggactcatctgttatttttgataccctctacttgattctc
gtttttggtcatgggacagcagagcaagatgtgttggatccacctgaagattgttttcgc
atcaggatggttattacacttcttgaaacatgtgggcattattttgatcgaggttcttca
aagagaaaactcgacaggttcttaattaatttccagaggtatattcttagcaaaggtcca
ttaccgctggatattgaatttgacttacaggacttgtttgtggatttacgcccaaaaatg
acccgatattcttccattgaagaagttaatgcagttctaattgaacttgaggagcatgaa
cgtactgttttgactgacaaggccaacagtgagaagcactcagacactgaaaagcctcca
agcaggtctacttctggcagtgtctcagtgaacggacagaaccatgaaaatggtattgag
ggaaatggtggagtgcacgaagcaatggctgacagtgacagtgattcagggagtggcacc
cttgacccagagggacatgaggatgaagaagatttggatgaagagaatcatgatgatgcg
tgcgatagtgatgatgattatgatgatgcgggcggtcctgcttctgatgaggatgaagaa
gtacgtgttaggcagaaggtgacccacatggaccctcaggaggaagctgagtttgacaaa
gaatttagggctctgatgcaggagagcttggattcacgaaagctagaattgcgggcccgg
ccaacactgaacatgatgataccaatgaatgtgtttgaggggcccaccaaagatcatcat
ggcaggggtttcgagggggaaagtggcgatgagacattggatgaggaagcaggaggaagc
aaggaggttagggtgaaagttcttgtgaagcgtgggaacaagcaacaaacaaaacagatg
tccattcctcgggattgctcactcgtgcaaagcacgaaacagaaagaagcagcagaactc
gaagagaaacagaacatcaagaggctggttttggaatacaatgatagagaagaggaggag
cttaatgggtttgggacgcaaccaacaagctggatgcaaagcgggggaagcagagtttcc
aatcggggccacacgtgggaaggacatggtggagggaggggtaccggatcacgccaccgt
catcagcattattattctggtggtggaatctattataatagtcgaagaaagtga
DBGET
integrated database retrieval system
