KEGG   Camellia sinensis (tea plant): 114323627
Entry
114323627         CDS       T07364                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    114323627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csin03019]
    114323627
Messenger RNA biogenesis [BR:csin03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     114323627
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_WDR41 Beta-prop_VPS8 Ge1_WD40 eIF2A Beta-prop_NUP159_NUP214 Beta-prop_RIG_1st Beta-prop_WDR11_1st Beta-prop_IFT140_1st Beta-prop_HPS5 CFAP43_N Tricorn_2nd Beta-prop_SCAP MIOS_WD40 DUF5711 PAN2_N WD_LRWD1 Beta-prop_ACSF4 Nbas_N PD40 Beta-prop_LRRK2 Cytochrom_D1
Other DBs
NCBI-GeneID: 114323627
NCBI-ProteinID: XP_028127087
LinkDB
Position
Unknown
AA seq 221 aa
FLPAAYRQLFFVQGTTLAVAGGGSASIKLWDTAEWKLITSLSIPRPEGLKPSDKSGNKKF
VLSVAWSPDGKRLACGSIDGTISIFDVSRAKFLHHLEGHCMPVRSLVYSPIDPRILFSAS
DDSHVHMYDAEGKSLISAMSGHASWVLSVDASPDGAAIATGSSDRSVKLWDLKMRAAVQT
LSNHVDPVWAVAFRPPGGTGMRAGRLASVSDDKSISLYDYS
NT seq 666 nt   +upstreamnt  +downstreamnt
tttctgccagcagcctaccgacaattgttttttgttcagggtaccactttagctgttgct
ggtgggggtagtgcgtccatcaaactatgggacactgccgaatggaagcttatcacctcc
ttatctatccctcgcccggaaggattgaaaccctctgataaaagcggcaacaagaaattt
gttctctctgttgcatggagccccgatgggaaacgactcgcttgtggctcaattgatggc
acaatctccattttcgacgtctctcgcgccaaattcctgcaccatttggaaggccactgc
atgcctgtgcgttctctcgtatattcgcctattgatccgaggatactgttttctgcctcc
gatgacagccatgtgcacatgtacgatgctgaggggaagagcttgattagcgccatgtca
ggtcacgcgagctgggttctgagtgttgatgcaagtccagatggggcagctattgccacg
ggctcaagcgacaggtctgtgaaactatgggatcttaaaatgagggcggctgtgcagacg
ctgagcaaccatgtggacccggtttgggcggtggcgtttcgaccacctggagggactggc
atgcgagccggtagactcgcaagcgtgtcggatgacaagagcatatcactctatgattac
tcttga

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