Cronobacter sakazakii ATCC 29544: CSK29544_00213
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Entry
CSK29544_00213 CDS
T03903
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
csj
Cronobacter sakazakii ATCC 29544
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csj03021
]
CSK29544_00213
Transcription machinery [BR:
csj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CSK29544_00213
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AKE93178
LinkDB
All DBs
Position
221092..223998
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDARMVTLLFPATGENRLYARNDSPVTRVMFNPGDT
VTSHEGWQLKVDEVKEENGLLIYIGTRLDTLEENVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYQSEQYRMPWSGLRGQRTNLIPHQLNIANDVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH
ESDNPFDTEQLVICSLDFVRRNKQRLEHLCDAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLL
AGTHLNDEQLNTLSELIGEQDIEPLLQTANSDRDGAESARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPQRELHTIKLPLPTQYQTAIKVSGIMGTRKSAEERARDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASQLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSVYEQLIGYLAAPENT
EGFDALIQACRKQHDELKAQLEQGRDRLLEIHSNGGEKAQQLADAIAEQDDDTGLVNFAM
NLFDIVGINQDDRGEHMIVLTPSDHMLVPDFPGLPEDGCTITFNRDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSCTISLLKNKALPVGTLLLELIYVVEAKAPKQLQLNRFLPPTP
VRMLLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQEVHAILQGGEAQVEKAAR
ELIDAARQEADDKLSAELSRLEALRAVNPNIRDDELAAIEHNRQQVLENLNQASWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacggaaagcgaactgggactgggc
accgtggtggcgattgatgcccgcatggtgactctgcttttcccggctaccggtgaaaat
cgtctgtatgcccgaaatgactccccggtcacccgcgtaatgttcaacccgggcgatacc
gtgaccagccacgaaggctggcagttgaaagtggatgaagtaaaggaagaaaacggctta
cttatttatatcggcacccgtctggatacgcttgaggaaaatgtcgcgctgcgcgaagtg
ttcctcgacagcaaactggtgttcagcaaaccgcaggaccgcctgttcgccggtcagatt
gacagaatggaccgctttgccctgcgctatcgcgcccgcaagtaccagagcgaacagtac
cggatgccgtggagcggcctgcgcggccagcgcacgaaccttatcccgcaccagctcaat
atcgccaatgacgtgggccgccgccacgcgccgcgcgtgctgctggccgatgaagtgggt
ctcggcaaaaccatcgaggccgggatgatcattcatcagcagctgcttgcaggcgcggcc
gagcgcgtgctgattgtcgtgccggaaacgctgcaacaccagtggctggtggagatgctg
cgccgcttcaacctgcgcttctcgctgtttgatgacgagcgttacgccgaagcccagcat
gaatccgacaacccgttcgacaccgaacaactggtgatctgctcgctggatttcgtgcgc
cgcaacaagcagcgccttgagcatctgtgcgacgccgagtgggatctgctggtggtggat
gaagcccatcacctggtctggagcgaagatgccccgagccgtgaatatcaggcgattgaa
cagctggccgaacgcgtgccaggcgtactgctgctgaccgcgacgccggaacagctcggt
atggagagccacttcgcgcgtctgcgcctgctggacccaaaccgtttccacgatttcgag
cagtttgtcgaagaacagcagaactatcgcccggtggcggacgccgtggcgctgctgctg
gcgggcacgcacctgaacgatgaacagctcaacaccttaagcgaactgattggcgaacag
gatatcgagccgctgctgcaaaccgccaacagcgaccgcgacggcgccgaaagcgcgcgt
caggagctggtctccatgctgatggaccgccacggcaccagccgcgtgctgttccgtaac
acccgcaacggcgtgaaaggcttcccgcagcgcgagttgcacaccattaagctgccgctg
ccgacgcagtaccagaccgcgattaaagtctctggcatcatgggcacgcgtaaatctgcc
gaagagcgcgcgcgcgatatgctctacccggagcagatttatcaggaatttgaaggcgac
agcggcacctggtggaacttcgacccgcgcgtggagtggctgatgggctatctgaccagc
caccgctcgcagaaagtgctggtgatttgcgccaaagccgccaccgccctgcaactggag
caggtgctgcgcgagcgagaaggcatccgcgccgccgtgttccatgaaggcatgtcgatt
atcgagcgcgaccgcgcggcggcctggtttgctgaagaagataccggcgcgcaggtgctg
ctgtgctcggaaatcggctccgaaggccgcaacttccagttcgccagccagctggtgatg
ttcgatctgccgttcaaccccgatctgctggaacagcgtatcggccgtctggaccgtatc
ggccaggcgcatgatatccagatccatgtgccgtaccttgagaaaaccgcgcaatccgtg
ctggtgcgctggtatcacgaagggctggacgcgttcgaacacacctgccctaccggacgc
gccatttatgacagcgtctatgagcagctgattggctacctcgccgccccggagaacacc
gaaggctttgacgcgttgattcaggcgtgccgcaaacagcacgatgaactgaaagcgcag
cttgagcagggccgcgaccgcctgctggagatccactctaacggcggcgaaaaagcccag
cagctggctgatgccatcgctgaacaggatgacgatacgggcctggtgaatttcgccatg
aacctgttcgacatcgtcggcatcaatcaggacgatcgcggcgaacatatgattgtgctg
acgccatccgatcatatgctggtgccggatttccccggcctgccggaagatggctgtacc
attacgtttaaccgcgacgtggcgctgtcgcgcgaagacgcgcagttcatcacctgggag
cacccgcttatccgcaacggtctggatctgatcctttccggcgacaccggcagctgcacc
atttcgctgctgaaaaacaaagcgttaccggtcggcacgctgctgctggaactgatttac
gtggtcgaagccaaagcgccgaagcagttgcagcttaaccgcttcctgccgccgacgccg
gtccgcatgctgcttgataaaaacggcaataacctggcaggccaggtggagtttgaaagc
ttcaaccgccagctcagcgccgtgaaccgccataccggcagcaagctggtgaacgcggtg
cagcaggaagtgcatgcgattctgcagggcggcgaagcgcaggtggagaaagcggcacgc
gagcttatcgacgcggcgcgtcaggaagccgatgacaaactctccgccgagctgtcgcgt
ctcgaagcgctgcgcgccgtgaacccgaatattcgcgacgacgaactggcggcgattgag
cataaccgtcagcaggtactggagaatcttaaccaggcgagctggcgactggatgcgctg
cgtcttatcgtagtgactcatcagtaa
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