KEGG   Cronobacter sakazakii ATCC 29544: CSK29544_00421
Entry
CSK29544_00421    CDS       T03903                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
csj  Cronobacter sakazakii ATCC 29544
Pathway
csj02020  Two-component system
Brite
KEGG Orthology (KO) [BR:csj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CSK29544_00421
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csj03021]
    CSK29544_00421
Transcription machinery [BR:csj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CSK29544_00421
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF PhyR_sigma-like HTH_24 HTH_36 HTH_28 HTH_23 HTH_11 HAC6_helical PCI HTH_3 HTH_Tnp_4 HTH_7 HTH_Mga HTH_40 TnsD PP1_inhibitor DUF2774 GerE HTH_10 HTH_IclR Rv2175c_wHTH HTH_VMAP-M9
Other DBs
NCBI-ProteinID: AKE93385
LinkDB
Position
439338..439859
AA seq 173 aa
MSDRATSTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMSSETLSTIRD
PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGVAPSPEERESQLETLQLVDSMLDG
LNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKAVEHCLLFRLEHGL
NT seq 522 nt   +upstreamnt  +downstreamnt
atgtctgaccgtgccacttccacagcttccttaacgttcgagtcgctttatggcacccat
cacggctggttgaaaagttggctgacgcgcaaactccagtctgcctttgatgcagatgac
attgcccaggacacttttttgcgggtaatgagcagcgaaacgctctcgacgatccgcgat
cctcgctctttcctgtgcactatcgccaaacgcgtgatggtggacctgtttcgccgaaac
gcgctggaaaaagcgtatctggagatgctggcgcttatgccggagggggtagcgccttca
cctgaggaacgcgaaagccagctcgagaccctacaactcgtcgacagcatgctggacggg
ctaaacggaaaaacacgtgaagcgtttctgctttcgcaactggatggcctgacatacagc
gagattgcgcacaaactcggtgtttccgtcagctccgtgaaaaaatacgtggcgaaagcc
gtcgagcactgcctgctgtttcgtctggagcatgggttatga

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