Cronobacter sakazakii ATCC 29544: CSK29544_00535
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Entry
CSK29544_00535 CDS
T03903
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Pathway
csj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSK29544_00535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csj03019
]
CSK29544_00535
03016 Transfer RNA biogenesis [BR:
csj03016
]
CSK29544_00535
Enzymes [BR:
csj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CSK29544_00535
Messenger RNA biogenesis [BR:
csj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSK29544_00535
Transfer RNA biogenesis [BR:
csj03016
]
Prokaryotic type
tRNA degradation factors
CSK29544_00535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
OB_PDCD11
aRib
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AKE93499
LinkDB
All DBs
Position
complement(546606..548678)
Genome browser
AA seq
690 aa
AA seq
DB search
MMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRRE
GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS
GIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQM
LGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRIT
DKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDG
REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLF
HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSS
SMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGS
REGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTI
KISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE
IEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE
VDRQGRVRLSIKEATEQTQEAAAPAAPEAE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgatggctcgtcaggccactgctgccgttatggtaagcatggatgacactgcggtattc
gtgaccgtagttggtgctaaaaaagcgaagccgggccaggactttttcccgctgaccatt
aactatcaggagcgtacctacgctgctggccgcatcccgggcggtttcttccgtcgtgaa
ggccgtccgagcgaaggcgaaacgctgatcgcgcgtctgattgaccgcccgctgcgtccg
ctgttcccggaaggcttcgttaacgaagttcaggttatcgcgaccgttgtttccgttaac
ccacaggttaacccggatatcgttgcgatgattggcgcgtccgctgcgctgtctctgtcc
ggtattccattcaacggcccgattggtgccgcgcgcgtgggttacatcaacgaccagtac
gtactgaacccgacccaggatgagctgaaatccagcaaactggatctggttgtcgctggt
actgaaagcgccgtgctgatggtggaatccgaagctgaactgctgagcgaagatcagatg
ctgggcgccgtggtgttcggccacgagcagcagcaggttgtgattcagaatatcaacgat
ctggtgaaagaagcgggcaaaccgcgctgggactggcagcctgaagccgctaacgaagcg
ctcaacgcgcgcgtgaaagcgctggctgaatctcgtctgagcgacgcgtaccgcatcact
gataaacaagaacgttacagccagatcgacgctatcaaagcggacgtcatcgcggcattg
caggctgaacaggccgaaggcgacgcgcttgacgaaaacgagctgggcgacatcctgcac
gctatcgagaagaacgttgttcgttcccgcgtactggctggcgaaccgcgtatcgatggt
cgcgaaaaagacatgatccgtggcctggacgtgcgcactggcgtactgccgcgtactcac
ggctccgcgctgttcacccgtggtgaaacgcaggcgctggttaccgcgacgctcggtacc
gaacgcgacgcgcagaatatcgacgaactgatgggcgagcgtactgaccgcttcctgttc
cactacaacttccctccgtactctgtcggcgaaaccggcatggtcggttctccgaagcgt
cgtgaaatcggtcacggtcgtctggcgaaacgcggcgtactggcagtcatgccggcagct
gaccgcttcccgtacaccgtccgcgtggtgtctgaaatcaccgaatccaatggttcttct
tccatggcttccgtgtgtggcgcttctctggcgctgatggacgcgggcgtgccgattaaa
gccgctgtcgcgggtattgcgatgggtctggtgaaagaaggcgaaaactttgtcgtactg
tccgacattctgggtgatgaagaccacctgggcgacatggacttcaaagtagccggttcc
cgtgaaggtatcactgcgctgcagatggatatcaaaatcgaaggcatcaccaaagagatc
atgcaggtggcgctgaatcaggctaaaggtgcgcgtctgcacattcttggcgtgatggaa
caggctatcaacgcaccgcgtggcgatatctctcagttcgcaccgcgtattcacaccatc
aagatcagcccggacaagatcaaagacgtgatcggtaaaggcggctctgtgattcgtgcg
ctgactgaagaaaccggcaccaccatcgaaatcgaagatgacggcacggtgaaaattgca
gcgaccgacggcgagaaagcgaaacacgcaattcgtcgtatcgaagagattaccgctgaa
atcgaagtgggccgtatctacaatggtaaagtgacccgcatcgttgacttcggtgccttc
gtcgctatcggcggcggtaaagaaggtctggtacatatctctcagatcgccgacaagcgc
gttgagaaagtgaccgactatctgcagatgggtcaggaagtaccggttaaggtactggaa
gttgaccgtcagggccgcgtacgtctgagcatcaaagaagcaaccgagcagactcaggaa
gcagcagcccctgctgcgccggaagccgagtaa
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