Cronobacter sakazakii ATCC 29544: CSK29544_00699
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Entry
CSK29544_00699 CDS
T03903
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Pathway
csj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSK29544_00699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csj03019
]
CSK29544_00699
03400 DNA repair and recombination proteins [BR:
csj03400
]
CSK29544_00699
Enzymes [BR:
csj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSK29544_00699
Messenger RNA biogenesis [BR:
csj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSK29544_00699
DNA repair and recombination proteins [BR:
csj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CSK29544_00699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF6972
Motif
Other DBs
NCBI-ProteinID:
AKE93663
UniProt:
A0A2S9U9T4
LinkDB
All DBs
Position
complement(730413..732242)
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIP
ALVKTGLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQVRLLY
IAPERLMMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMAL
TATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKAPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQAPCGNCDICLDPPRRYDGLVDAQKAL
SAIARVEQRFGMGYVVEVLRGANNQRIRELGHDKLKVYGIGRDQSQEHWVSVIRQLIHLG
VVTQNIAQHSALQLTEAARPFLRGEAPLMLAVPRVAALKPRVAQKSYGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLGINGVGTRKLERFGRPFMTLIR
EHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtttacagtcaggaaacgctggctaagcaggttttacaggaaacc
tttggctatcagcagttccgtccaggccaggccaccattatcgacgcggtgcttgaaggg
cgcgactgcctggtggtgatgcccaccggcggcggcaaatcgctgtgttatcaaatcccg
gcgctggtgaaaaccggcctgaccatcgtggtttctccactgatttctctgatgaaagac
caggtcgatcagcttctggcgaacggcgtggccgcggcgtgcctcaattcgacgcagagc
cgcgaggagcagcaggcggtgctggcgggctgtcgtaccggccaggtgcgcctgctctac
atcgcgccggaaagactgatgatggataacttcatcgacacgctgggttactgggatctg
gcgatggtggcggtggatgaggcgcactgtatctcccagtggggccacgatttccgcccg
gaatacgcggcgctcggccagctgcgcgcgcgtttcccggcggtgccgtttatggcgctc
accgccacggcggatgacacgacgcggcgcgatatcgtgcgtcttctgggccttgacgat
ccgctgattgaaatcagcagtttcgaccgcccgaacatccgctacatgctgatggaaaaa
ttcaaaccgctcgatcagctgatgcgctatgtgcaggagcagcgcggcaaatccggcatt
atctactgcaacagccgcgcgaaagtggaagacaccgccgcgcgtctgcaaagccgcggt
atcagcgccgccgcctatcacgcgggccttgagcatgaggtgcgcgcgtcggtgcaggag
aaattccagcgcgacgatttacagattgtggtggcgaccgtggcgttcggtatgggcatc
aacaaacccaacgtgcgctttgtcgtgcacttcgatattccccgcaatattgaatcctac
tatcaggagacgggtcgcgccgggcgcgacggcctgcctgccgaagcgatgctgttttac
gatccggcggatatggcgtggctgcgccgctgtctggaagaaaaagcgcccggcccgctg
caggatatcgaacgtcacaagctgaacgcgatgggcgcgttcgccgaggcgcaaacctgc
cgccgtctggtgctgctgaactatttcggcgaagggcgtcaggcaccgtgcggcaactgc
gatatctgcctcgatccgccgcgccgctacgatggcctggtggacgcgcaaaaagcgctg
tcggctatcgcgcgcgtggagcagcgcttcgggatgggctatgtggtggaagtgctgcgc
ggcgcgaacaaccagcgcatccgcgaactgggccacgacaagctcaaggtgtacggcatc
gggcgcgatcagagccaggagcactgggtcagcgttatccgccagcttattcatctgggc
gtggtgacgcagaacatcgcacagcattcggcattgcagctgaccgaagcggcgcgcccg
ttcctgcgtggcgaagcgccgctgatgctggcggtgccgcgcgtcgcggcgctcaaaccg
cgcgtggcgcaaaaatcgtacggcggcaattacgaccgcaagctgttcgcgaaactgcgc
aaactgcgcaaagccatcgctgatgaagaaaacatcccgccatatgtcgtctttaacgac
gcgacgctgattgaaatggccgagcagatgccgctcagccccggcgaaatgcttggcatt
aacggcgtcggcacccgtaaactggagcgcttcggcaggccgtttatgacgctcatccgc
gagcacgtcgacggcgacgacgaagagtag
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