Cronobacter sakazakii ATCC 29544: CSK29544_01350
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Entry
CSK29544_01350 CDS
T03903
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csj03016
]
CSK29544_01350
Enzymes [BR:
csj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CSK29544_01350
Transfer RNA biogenesis [BR:
csj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CSK29544_01350
Prokaryotic type
tRNA splicing ligases
CSK29544_01350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AKE94311
UniProt:
A0A7V7UP33
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All DBs
Position
1431259..1432485
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AA seq
408 aa
AA seq
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MKENHYQTLAQANGAPVKMWTHGVPVEPEAREQLLKTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLVARDLPDNLSGLRSAIEQAVPHGRTTGRG
QRDKGAWSNTPQDVDHHWASLAPRFKRLTDKYPNLLKTNNHQHLGTLGTGNHFIEICLDE
QERVWVMLHSGSRGVGNAIGTHFIGLAQKDMQRHMANLPDRDLAYFEEGSKHYADYIEAV
EWAQDFARQNREVMMNRVLAALSSIITKPFMTQQEAVNCHHNYVQKETHFGEEILVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaatcactatcagacgctggcgcaggctaacggcgcgccggtaaaaatgtgg
acccacggcgtgccggtagagccggaagcgcgtgagcagctgctgaaaacggcgaaaatg
ccgtttatttttaaacacctggcggtgatgccggatgtgcatctcggtaaaggctcgacc
atcggcagcgtgatcccgaccaaaggcgcgattatcccggcggcggtgggcgtggatatc
ggctgcgggatgatcgcggtgcgcacgtcgctcgtggcgcgcgatctgccggataacctg
agcgggctgcgcagcgccatcgaacaggccgtcccgcacgggcgcaccacagggcgcggc
cagcgtgataaaggcgcgtggtcgaacacgccgcaggatgtggaccaccactgggcatcg
cttgcgccgcgctttaaacgcctgacggataaatatcccaacctgttgaagactaacaat
catcagcatctgggaacgctcggtacgggtaaccactttatcgagatctgccttgatgaa
caggagcgcgtgtgggtgatgctgcacagcggatcgcgcggcgtgggtaacgccatcggc
acccatttcatcgggcttgcgcagaaagatatgcagcgccatatggcgaatctgccggac
cgcgatctcgcctattttgaagagggcagcaagcactacgccgattacatcgaggcggtg
gagtgggcgcaggatttcgcgcgccagaaccgcgaagtgatgatgaaccgcgtgctggcg
gcgctttcctcgattatcacgaagccgtttatgacgcagcaggaggccgtgaactgccac
cataactatgtgcagaaagagacgcattttggtgaagagatcctggtgacgcgcaaaggc
gcggtgtcggcgcaaaaaggccagatgggcatcattccgggctccatgggtgccaaaagc
tttatcgtgcgcgggctgggaaacgaagagagtttttgttcatgcagccacggcgcaggg
cgcgcgatgagccgtaccgcggcgaaaaaacgcttcacggtggaagatcaaatccgcgcc
acggcgcacgtggagtgccgtaaagacagcgatgtcattgatgagatcccgatggcgtat
aaagacatcgacgccgtgatggccgcgcagtcgtcgctggtggaaattgtgcatacgctg
cgtcaggtcgtgtgcgtgaaaggataa
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