Cronobacter sakazakii ATCC 29544: CSK29544_01460
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Entry
CSK29544_01460 CDS
T03903
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Pathway
csj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSK29544_01460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csj03019
]
CSK29544_01460
03016 Transfer RNA biogenesis [BR:
csj03016
]
CSK29544_01460
Enzymes [BR:
csj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CSK29544_01460
Messenger RNA biogenesis [BR:
csj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSK29544_01460
Transfer RNA biogenesis [BR:
csj03016
]
Prokaryotic type
tRNA degradation factors
CSK29544_01460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AKE94421
UniProt:
A0A2S9UB92
LinkDB
All DBs
Position
1548565..1551030
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AA seq
821 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELASELGIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRNLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHTLYKALEEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGNKPEPRDYAELLDSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLIAKEQGHEGNTTESG
GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGAKNRSRRQVGKRQNFEPNEAFRSEKGRGKVKKD
GAARAEKSDKPAKSSKKPSAKTQKIAAATKAKRAAKKKRDN
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatccttttcaggaacgagaagctgaaaagtacgccaaccccatcccgagc
cgggaattcatccttgaacatttaaccaaacgtgaaaaaccggctaatcgcgatgaactg
gcgtctgaactcggcattgaaggcgaggaacagctggaagcgctgcgtcgccgcctgcgc
gccatggagcgcgacggccagttagtctttacccgccgccagtgctatgcgctgccggaa
cgtcttgatctgcaaaaaggcaccgtcatcggccatcgcgacggttacggctttttacgc
gtagaaggacgcaaagacgatctctatctctcgtctgagcagatgaaaacctgcattcac
ggcgatatcgtgctggcgcagccgctcggttcagaccgcaaaggccgccgcgaagcgcgt
atcgtgcgcgtgctggtgccgaagcagagcaatatcgtcgggcgctatttcaccgacgcg
ggcgtcggcttcgtggtgccggacgacagccgcctgagctttgatatcctcattccgccg
gaagaggtgatgggcgcacgcatgggctatgtcgtggtcgtcgagctgacacagcgtccg
acgcggcgcaccaaagcgatcggtaaaattgttgaagtgctcggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgcacccatgaaatcccttacgtctggccgaaagcc
gtcgaagaacagattgcgcacctgaaagaagaagtgccggaagaggccaaagtggggcgc
gtcgatttgcgcaacctgccgctcgtcaccatcgacggcgaagacgcccgcgactttgac
gacgccgtattctgtgagaaaaaacgcggcggcggctggcgcctgtgggtcgctatcgcc
gacgtcagctattatgtgcgtccgccaacgccgcttgataacgaagcgcgcaaccgcggc
acgtcggtttacttcccgtcgcaggttgtcccgatgctgccggaagtgctctccaacggc
ctgtgttcgctgaacccgcaggtggatcgcctctgtatggtctgtgagatgacgatctcc
gccaaaggccgtctcactggctataaattctatgaagcggtgatgagctcgcacgcccgt
ctgacctacaccaaggtgtggcatattctgcagggcgatgaagatctgcgcagccagtat
caaccgctggtgaagcatcttgaagagctgcacacgctgtataaagcgctggaagaggcg
cgcaccgagcgcggcggtatctcgtttgagagcgaagaggcgaagttcatcttcaacgcc
gagcgccgtatcgatcgcatcgagcagacccagcgtaacgacgcgcacaagcttatcgaa
gagtgcatgatcctcgccaacatttcggcggcgcgctttgtcgagaagcacaaagagccg
gcgctgttccgtattcacgatcgcccgacgaatgaagcgatcacctcgttccgctctgta
ctggcggagctggggctggagctgccgggcggcaacaagccggaaccgcgcgactacgcc
gagctgcttgattccatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggccactttggcctcgcgctg
caatcctacgcgcattttacctcgccgattcgccgctacccggatctcacgctgcaccgc
gcgatcaaatacctgatcgccaaagagcagggccacgaaggcaacaccaccgaaagcggc
ggctggcactacaccatggaagagatgctgcagctgggccagcactgctccatgaccgaa
cgccgcgccgatgaagctacccgtgaagtggcggactggctgaagtgcgacttcatgcag
gatcaggtcggccagaccttctccggcgtgatttcaagcgtcaccggctttggtttcttt
gtgcgcctcaccgatctctttatcgacggcctggtgcatgtctcgtcgctggataacgac
tactaccgcttcgatcaggtcggtcagcggctgattggcgaatccggcggccagacgtac
cgtctgggcgaccgcgtcgaagtcaaagtcgaagcggttaacatggacgagcgcaaaatc
gacttctcgctcatctccagcgaacgcgggccgcgtaacgtgggtaaaaccgcgcgcgag
cgcgagaaacgaggcggcggcgctaaaaaccgcagccgtcgtcaggtcggcaaacgccag
aatttcgaacccaacgaggcgtttcgcagcgagaaaggccgtggaaaggtgaagaaagac
ggcgcggcgcgggcagaaaagagcgacaaaccggcgaaaagcagtaaaaaaccgtcggcc
aaaacgcagaaaatcgcggccgccaccaaagcgaagcgcgcggcgaagaaaaagcgcgac
aactaa
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