Cronobacter sakazakii ATCC 29544: CSK29544_02951
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Entry
CSK29544_02951 CDS
T03903
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csj03019
]
CSK29544_02951
Enzymes [BR:
csj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CSK29544_02951
Messenger RNA biogenesis [BR:
csj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CSK29544_02951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
T2SSE
nSTAND3
ResIII
AAA_16
PhoH
NTPase_1
HALZ
SLFN-g3_helicase
MCM
Motif
Other DBs
NCBI-ProteinID:
AKE95902
LinkDB
All DBs
Position
3059073..3062978
Genome browser
AA seq
1301 aa
AA seq
DB search
MMEKQNITLSALMARLDSLMLRDKSRFARRLHGAKKIKNTESQQALFEQLSQEMSEAAGK
VLLREAARPAITYPENLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVEELGREGPGDILIFMSGE
REIRDTADGLMKLNLPHTEVLPLYARLSNSEQNRVFQPHAGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDAQ
ASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPLDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAGYREVHTALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWIEPVAQHLIKRSYSEPHWERAQGAVMASE
KVTLYGLPIVAARSVNYSQIDPVLSRELFIRHALVEGDWQTRHAFFRENQKLRAEVEELE
HKSRRRDILVDDDTLFEFYDQRISVDAISARHFDSWWKKASRETPDLLNFEKSMLIKEGA
EKVSKLDYPNFWHQGNLKLRLTYQFEPGGDADGVTVHIPLPLLNQVEDAGFEWQVPGMRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTIDREAW
QAEQVPDHLKMTFRVVDEKGRKLREGKDLHALKEGLKEKVQETLSAVADDGIEQSGLHIW
SFGTLPERYEQKRGGYQVKAFPALVDEKESVGIRLFDNPQEQQHAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIAENGGPVWSEAGFAQLHDK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGYKRLGDTLRYLHAIEKRLEKMAVDPHRDRAQMLKVEAVQQAWQQWLNKLPPARRDDDD
VQEIRWMIEELRVSYFAQQLGTPYPVSDKRVLQAMEQVSGT
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaaacaaaatattactctctccgccctgatggcacgtctcgactcgctgatg
ctgcgcgataaaagccgcttcgcccgtcgcctccacggggctaaaaagattaaaaatact
gaatctcagcaggcgcttttcgaacagctctctcaggagatgagcgaggcggcagggaaa
gtcctgctgcgcgaagcggcgcgcccggcgattacatacccggaaaacctgccggtcagc
cagaagaaacaggacatcctcaatgccgtgcgtgaccatcaggtggtgatcgtggcgggg
gagaccggctccgggaaaaccacccagttgccgaaaatctgcatggaacttgggcgcggg
gtaaaagggcttatcggccacacccagccgcgtcgtctcgcggcgcgtaccgtggcgaac
cgcatcgccgaagagctgcaaaccgagccgggcggctgcgtcggttataaagtgcgcttt
agcgatcacgtcagcgacaacaccatggttaagctgatgaccgacggtatcctgctggcg
gaaatccagcaggatcgcctgctgatgcagtacgacactatcatcatcgatgaagcgcac
gagcgcagcctgaacatcgattttctgctgggttacctgcgcgaactactgccaaagcgc
ccggatctgaaagttattattacgtcggcgaccatcgatcctgagcgtttctcgcgccac
tttaataacgcgccgattatcgaagtttctggccgtacgtatccggttgaggtgcgctac
cgcccgattgtggaagaagcagacgataccgagcgggaccagctgcaggcgattttcgac
gccgtggaagagctgggccgcgaagggccgggcgatatcctgatctttatgagcggcgag
cgtgaaatccgcgacaccgctgacgggctgatgaaactcaacctgccgcacaccgaggtg
ctgccgctctatgcgcggctctccaacagcgaacagaaccgcgtcttccagccgcatgcc
gggcgacgcattgtgctggcgaccaacgtcgccgaaacgtcgctgaccgtgccgggcatt
aaatatgtgatagaccccggtacggcgcgcatcagccgttacagctaccgcaccaaagtg
cagcggctgccgattgagccggtgtcgcaggcgtctgccaaccagcgtaaaggccgctgc
gggcgcgtctcggaagggatctgtatccgcctttattcggaagacgatttcctctcgcgc
ccggaatttaccgacccggaaatcctgcgcaccaacctggcgtccgtcattctgcaaatg
acggcgctggggcttggcgatatcgccgcgttcccgtttgtcgaagcgccggataagcgc
aacattcaggacggtgtgcgtctgctggaagagctgggcgctatcaccaccgacgcgcag
gcgtcagtgtataaactgacgccgctgggccgtcagctgtcgcaactgccggtggacccg
cgtctcgcgcgcatggtgctggaggcgcaaaagcatggctgcgtgcgcgaggcgatgatc
atcacctccgcgctgtcgattcaggacccacgcgagcgtccgctcgataaacagcaggcg
tcggatgagaaacaccgccgcttccacgataaagagtccgatttcctggccttcgtgaac
ctgtggaactacctcggcgagcagcaaaaggcgctgtcgtccaatcagttccgccgcctg
tgccgtaccgattaccttaattatctgcgggtgcgcgaatggcaggatatctacacccag
ctgcgccaggtggtcaaagagcttggcattccggtgaacagcgaaccggcgggctaccgc
gaagtgcacacggcgctgttgaccgggctgttgtcgcacatcggcatgaaagacgccgat
aaacaggagtacaccggcgcgcgcaatgcccgtttctccattttccccggctccgggctg
tttaaaaagccgccgaagtgggtgatggtggcggagctggtggaaaccagccgcctgtgg
gggcgaatcgcggcgcgtatcgacccggagtggatcgagccggtggcgcagcacctcatt
aagcgctcatacagcgagccgcactgggagcgcgcgcagggtgccgtgatggcaagcgag
aaagtgacgctctacggcctgccgatcgtggccgcgcgcagcgttaactacagccagatc
gatccggtgctttcgcgtgagcttttcatccgccacgcgctggtggaaggcgactggcag
acgcgtcacgcctttttccgcgaaaaccagaaactgcgcgccgaagtggaggagctggag
cataaatcgcgtcgccgcgacattctggtggacgacgacacgctgtttgaattttacgat
cagcgcatcagcgttgatgcgatttccgcgcgccacttcgacagctggtggaaaaaggcg
agccgtgaaacgccggatctgctcaacttcgaaaagagcatgttgattaaagagggcgcg
gagaaggtcagcaagctcgattacccgaacttctggcatcagggcaacctgaagctgcgc
ctgacttatcagtttgagccgggcggcgacgccgacggcgtgacggtgcatattccgctg
ccgctgttaaaccaggtggaagacgcgggcttcgaatggcaggtgccgggaatgcgccgc
gaactcatcatcgcgctgatcaaatcgctgccaaaacccgtgcgccgcaatttcgttccg
gcacctaactacgccgaggcgtttttaggccgcgttacgccgctggaactgcctctgctg
gacgcgctggagcgcgaactgcgccgtatgaccggcgtgacgattgaccgcgaggcgtgg
caggccgaacaggtgcccgatcatcttaaaatgactttccgggtggtggatgagaagggc
cgcaagctgcgcgagggcaaagatctccacgcgctgaaagaggggctgaaagagaaagtg
caggaaaccctttcagcggtggcggatgacggcatcgagcagagcgggctgcatatctgg
agcttcggcacgctgcccgagcgctatgagcagaagcgcggcggctatcaggtgaaagcg
ttcccggcgctggtggatgagaaagagagcgtcggcatccggctgtttgataacccgcag
gagcagcaacacgccatgtggcgcgggctgcgccgtctgctgttgcttaacattccgtcg
ccgattaagtatctgcatgagaaactgccgaacaaagcgaagctcgggctttatttcaac
ccgtacggcaaggtgctggatctgattgacgactgcatctcctgcggcgtcgataagctt
atcgccgaaaacggcgggcctgtatggagcgaagcgggctttgcgcagcttcacgataaa
gtgcgtgcggaactgaacgacaccgtggtggatatcgcaaagcaggtcgagcagatcctg
acggcggtgttcaatatcaataagcgtctgaaagggcgcgtggatatgacgatggcgctc
ggcctctctgatatcaaagcgcagatgagcgggctggtgtaccgcggttttgtcaccggc
aacggttataagcgcctcggcgacacgctgcgttatctccacgccatcgaaaaacggctt
gagaagatggccgtcgacccgcaccgcgaccgcgcgcagatgctcaaagtggaagctgta
cagcaggcgtggcagcagtggcttaacaagctgccgcccgcgcggcgcgatgacgacgac
gtgcaggagatccgctggatgatcgaggagctgcgcgtgagttatttcgcccagcagctc
ggcacgccatacccggtctccgacaagcgcgtgttgcaggcgatggagcaggtgagcggg
acgtag
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