Cronobacter sakazakii ES15: ES15_0491
Help
Entry
ES15_0491 CDS
T02119
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csk
Cronobacter sakazakii ES15
Pathway
csk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ES15_0491 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csk03019
]
ES15_0491 (rnr)
03016 Transfer RNA biogenesis [BR:
csk03016
]
ES15_0491 (rnr)
Enzymes [BR:
csk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ES15_0491 (rnr)
Messenger RNA biogenesis [BR:
csk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ES15_0491 (rnr)
Transfer RNA biogenesis [BR:
csk03016
]
Prokaryotic type
tRNA degradation factors
ES15_0491 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AFJ98064
LinkDB
All DBs
Position
528145..530610
Genome browser
AA seq
821 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELASELGIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRNLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHTLYKALEEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGNKPEPRDYAELLDSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLIAKEQGHEGNTTESG
GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGAKNRSRRQVGKRQNFEPNEAFRSEKGRGKVKKD
GAARAEKSDKPAKSSKKPSAKTQKIAAATKAKRAAKKQRDN
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatccttttcaggaacgagaagctgaaaagtacgccaaccccatcccgagc
cgggaattcatccttgaacatttaaccaaacgtgaaaaaccggctaatcgcgatgaactg
gcgtctgaactcggcattgaaggcgaggaacagctggaagcgctgcgtcgccgcctgcgc
gccatggagcgcgacggccagttagtctttacccgccgccagtgctatgcgctgccggaa
cgtcttgatctgcaaaaaggcaccgtcatcggccatcgcgacggttacgggtttttacgc
gtcgaaggacgcaaagacgatctttatctctcgtctgagcagatgaaaacctgcattcac
ggcgatatcgtgctggcgcagccgctcggttcagaccgcaaaggccgccgcgaagcgcgt
atcgtgcgcgtgctggtgccgaagcagagcaatatcgtcgggcgctatttcaccgacgcg
ggcgtcggcttcgtggtgccggacgacagccgcctgagctttgatatcctcattccgccg
gaagaggtgatgggcgcgcgcatgggctatgtcgtggtcgtcgagctgacacagcgtccg
acgcgccgcaccaaagctatcggtaaaattgttgaagtgctcggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgcacccatgaaatcccttatgtgtggccgaaagcc
gtcgaagaacagattgcgcacctgaaagaagaagtgccggaagaggccaaagtggggcgc
gtcgatttgcgcaacctgccgctcgtcaccatcgacggcgaagacgcccgcgactttgac
gacgccgtattctgtgagaaaaaacgcggcggcggctggcgcctgtgggtggctatcgcc
gacgtcagctactatgtacgcccgccgacaccgcttgataacgaagcgcgcaaccgcggc
acgtcggtttacttcccgtcgcaggttgtcccgatgctgccggaagtgctctccaacggc
ctgtgttcgctgaatccgcaggtggatcgcctctgtatggtctgtgagatgacgatctcc
gccaaaggccgtctcactggctataaattctatgaagcggtgatgagctcgcacgcccgt
ctgacctacaccaaggtgtggcatattctgcagggcgatgaagatctgcgcagccagtat
caaccgctggtgaagcatcttgaagagctgcacacgctgtataaagcgctggaagaggcg
cgcaccgagcgcggcggtatctcgtttgagagcgaagaggcgaagttcatcttcaacgcc
gagcgccgtatcgatcgcatcgagcagacccagcgtaacgacgcgcacaagcttatcgaa
gagtgcatgatcctcgccaacatttcggcggcgcgctttgtcgagaagcacaaagagccg
gcgctgttccgtattcacgatcgcccgacgaatgaagcgatcacctcgttccgctccgtg
ctcgcggagctgggtctggagctgccgggcggcaacaagccggaaccgcgcgactacgcc
gagctgctcgattctatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggccactttggcctcgcgctg
caatcctacgcgcactttacctcgccgattcgccgctacccggatctcacgctgcaccgc
gcgatcaaatacctgatcgccaaagagcagggccacgaaggcaacaccaccgaaagcggt
ggctggcactacaccatggaagagatgctgcaactgggccagcactgttccatgacggaa
cgccgcgccgacgaagccacccgtgaagtggcggactggctgaagtgcgacttcatgcag
gatcaggtcggccagaccttctccggcgtgatctcaagcgtcaccggctttggtttcttc
gtgcgcctgaccgatctctttatcgatggcctggtgcatgtctcgtcactggataacgac
tactaccgctttgatcaggtcggtcagcggctgattggcgaatccggcggccagacgtac
cgtctgggcgaccgcgtcgaagtcaaagtcgaagcggttaacatggacgagcgcaaaatc
gatttctcgctcatctccagcgaacgcgggccacgtaacgtgggtaaaaccgcgcgcgag
cgcgagaagcgaggcggcggcgctaaaaaccgcagccgtcgtcaggtcggcaaacgtcag
aatttcgaacctaacgaggcatttcgcagtgagaaaggccgtggaaaggtgaagaaagac
ggcgcggcgcgggcagagaagagcgacaaaccggcgaaaagcagtaaaaaaccgtcggcc
aaaacgcagaaaatcgcggccgctactaaagcgaagcgcgcggcgaagaaacagcgcgac
aactaa
DBGET
integrated database retrieval system
