Coccomyxa subellipsoidea: COCSUDRAFT_11028
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Entry
COCSUDRAFT_11028 CDS
T02914
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K10756
replication factor C subunit 3/5
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03030
DNA replication
csl03410
Base excision repair
csl03420
Nucleotide excision repair
csl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCSUDRAFT_11028
03410 Base excision repair
COCSUDRAFT_11028
03420 Nucleotide excision repair
COCSUDRAFT_11028
03430 Mismatch repair
COCSUDRAFT_11028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csl03032
]
COCSUDRAFT_11028
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_11028
03400 DNA repair and recombination proteins [BR:
csl03400
]
COCSUDRAFT_11028
DNA replication proteins [BR:
csl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
COCSUDRAFT_11028
DNA Replication Termination Factors
ELG1-RFC complex
COCSUDRAFT_11028
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
COCSUDRAFT_11028
DNA repair and recombination proteins [BR:
csl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
COCSUDRAFT_11028
Check point factors
HRAD17(Rad24)-RFC complex
COCSUDRAFT_11028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
AAA
DNA_pol3_delta2
Rad17
Sigma54_activ_2
RuvB_N
AAA_22
Rep_fac_C
Mg_chelatase
AAA_5
AAA_assoc_2
AAA_16
AAA_11
TsaE
Stork_head
ABC_tran
AAA_18
Motif
Other DBs
NCBI-GeneID:
17045237
NCBI-ProteinID:
XP_005651766
JGI:
11028
UniProt:
I0Z9A3
LinkDB
All DBs
AA seq
354 aa
AA seq
DB search
MLWVDKYRPRTLDDLIIHQDIGESLKKLVTTGDCPHLLFYGPPGAGKKTLILGLLREIYG
TAVEKIKVETKPWKIELPSRKLEIELTTVQSNYHVELNPSDVGNQDRYVVQEVIKDMCKN
RPLELKGQRGYKVLLLNEVDRLSREAQHSLRRTMEKYSATCRLIFSCSNVSKVIDPLRSR
CLCVRVPGPTGSEIQHVLQHVAQKENVQLPDALCQRIVQMSDRNLRRALLTLETCRVTQY
PFTEAQSVQLPDWEMYIQEIAAFILQEQSPKRLYEVRGKLYELLVNCLPAELILRTLAMQ
LSRKLDDELRHKTIELAAFYEHRLQEGQKAIYHLEAFVAKFMSEYKSWSIAVLG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgggttgataagtaccgccctcggacgctagatgacttgatcatccaccaggat
attggcgaaagtcttaaaaagctggtcactacaggcgattgtccccatctccttttttat
ggaccacctggggctggcaagaagactctgatccttggccttttgcgagaaatatatgga
acagctgtcgagaagatcaaagttgagacgaagccatggaagattgagctgcccagccgt
aagctagagatagagctgaccacggtgcaaagcaactaccatgtggagctgaaccccagt
gatgtcggcaaccaggaccgctatgtggtgcaggaagtcatcaaagacatgtgcaagaac
cggccgttggagctaaaggggcagcgcggctacaaggtgctgctgctgaatgaggtggac
aggttgtcgcgcgaggcccagcacagcctcaggcgcaccatggagaagtactctgccact
tgcaggctcatcttctcctgctccaatgtgtccaaggtgatcgaccccctgcgcagcaga
tgcttgtgtgtgagagtgccaggcccgacaggctcggagatacagcacgtcctgcagcat
gtagcgcagaaggagaacgtgcagctgccagatgcactctgtcaacgcattgtccagatg
tctgaccgcaacctcaggagggcgttgctgactcttgagacttgccgtgtgactcagtac
cccttcactgaggcccagtctgtgcagctgccggactgggaaatgtacatccaggagata
gcggcattcattctgcaggagcaatcgcccaagaggctgtacgaggtcagggggaagctg
tatgagctgctggtgaactgcctcccggctgagctcatcttgcgcactttagctatgcag
ctctctcgcaaacttgacgacgaactgcgccacaaaaccatcgagctcgccgccttctat
gagcatcgcttgcaggagggccagaaggccatctatcacttggaggcgtttgttgcaaag
ttcatgagcgagtacaagtcatggagcattgctgtgctgggctag
DBGET
integrated database retrieval system
