KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_13056
Entry
COCSUDRAFT_13056  CDS       T02914                                 
Name
(RefSeq) histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
  KO
K14962  COMPASS component SWD2
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    COCSUDRAFT_13056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_13056
   03036 Chromosome and associated proteins [BR:csl03036]
    COCSUDRAFT_13056
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     COCSUDRAFT_13056
Chromosome and associated proteins [BR:csl03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     COCSUDRAFT_13056
    COMPASS/SET1 complex (yeast)
     COCSUDRAFT_13056
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd ANAPC4_WD40 WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_2nd WD_LRWD1 VID27 Beta-prop_DCAF4 RMC1_N Beta-prop_HPS5 PAN2_N
Other DBs
NCBI-GeneID: 17043794
NCBI-ProteinID: XP_005650334
JGI: 13056
UniProt: I0Z571
LinkDB
AA seq 326 aa
MQINDDVIRFFGVGRVFKDNSARINSLDFHRSEDLLVTAGEDDSIRTYNTQSGTSSKVLF
SKKYGVSHICFTHDPQSVIYASTKFCLQGSDHKIRYQTMHDNKYIRYFSGHTERVTGLCL
SPKNDMFLSASLDRKVRIWDLRVNKSEGVMDAPSQSCVAFDQQGLVLCVGGDRGLMRLYD
PKGYEHGPFSTFTVRPCLESILSIKFSADGKLLAAVMDGRIHLLDAFNGNLLQTFYTGSA
KGGPALEATFSPDSKYLLSGAGADRSIAAWNVKTMQEVARWGGHTGLPTALKWAPRRMLV
ASADTNLAMWIPNIQEMEARGVKWLQ
NT seq 981 nt   +upstreamnt  +downstreamnt
atgcagatcaatgatgatgtcatcaggttttttggcgtcggccgcgtcttcaaggacaac
tcagcgcgcatcaattccctagactttcacagaagtgaagacctcctggtcactgctggc
gaggacgattccattagaacatacaacacccagtcgggtacttcgagcaaagtccttttc
agcaagaaatatggagtttcccatatttgcttcacgcatgacccacaatcggtcatctac
gcctccaccaagttttgcttgcagggctcagaccataagatacggtatcagacaatgcac
gacaacaagtacatccgctatttcagcggccacacagagagggtcactgggctgtgcctg
tccccaaagaatgacatgttcctgtcagcatcgctggatcgcaaggtgaggatatgggat
ttgagggtgaacaagagcgagggtgtgatggacgctccttcccagtcctgtgtcgccttt
gaccagcagggattggtgttgtgcgttgggggcgaccggggcctcatgaggctgtacgac
cccaaaggctatgagcacggtccgttcagcacgttcacggtaaggccatgcctggagtcc
attttgagcatcaagttcagcgcggatgggaagctgctggcggctgtgatggatgggcgc
atccatttgttagatgcattcaatgggaacctgctgcagaccttctacactggctctgcc
aagggcggccctgccttggaggcgaccttctccccagacagcaaatacctgctctcaggt
gcgggtgctgacaggagcatcgcggcatggaatgtgaagacgatgcaggaggtggcgcgg
tggggcggccacacagggctgccgacagcgctcaagtgggcgccccgccgaatgctcgtg
gcctccgctgacaccaatctggccatgtggatccccaacatccaggagatggaagccagg
ggcgtcaagtggctgcagtga

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