Coccomyxa subellipsoidea: COCSUDRAFT_14172
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Entry
COCSUDRAFT_14172 CDS
T02914
Name
(RefSeq) DEAD-domain-containing protein
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_14172
03016 Transfer RNA biogenesis [BR:
csl03016
]
COCSUDRAFT_14172
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_14172
Spliceosome [BR:
csl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
COCSUDRAFT_14172
Transfer RNA biogenesis [BR:
csl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
COCSUDRAFT_14172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
AAA_lid_BCS1
CMS1
Motif
Other DBs
NCBI-GeneID:
17042520
NCBI-ProteinID:
XP_005649062
JGI:
14172
UniProt:
I0Z1J9
LinkDB
All DBs
AA seq
751 aa
AA seq
DB search
MSAFEELGVMPELIKGIEEMEWLLPTPVQAEAVPLILGGGDVMVAAETGSGKTGAFAVPI
LQVVHETVTARQQEAGSSNVPASGPVDCTLSTEDRDVVFNVSENGLSCSAMTKGWAGGRA
TVGATSGRLYFEVTMQNDGLCRVGWASRAAAFEIGRDKRSFGFGSTGKKSHGGTFTDYGR
AFGKGETVGCLLDMTTGQISYTVNGASMGVAFELPAQMRGQPLYPAVALKGAQARAAFGG
ADLRYGPPDGCVGIADAPSSQITSGVCLASAAAGVRTPSAIILEPSRDLAQQTHDAITSL
KRHLTSASLQSVLLVGGTQPKEAVRQLERGADIVTGTPGRIMDFVESGKLVLSSVKFFVL
DEADRLLDTGNQDTIMKLFSRFPKAGMGVARLQVLMFSATLHSVEVKDIAARICQGATLG
AHLHLQGREAVPDTVDHVLVAVDPKADRSWLQTTPEVPTDNIHAFDSSGPSVDTADNWSL
ALKRLKPRVLHRLIDAYKMEQCLVFCRTNFDCDNLEKFLNGLGGGGGGRWAGRRESGKEN
PYSCCVLAGARSTDQRREALQAFKQGEVRFLICTDVAARGLDISGLPYVVNLTLPDRAED
YIHRVGRVAGRAEKLGLAISLVSTVKEKVWYCSKKGYRPWERPSKKDVKDQKEGGHTIWY
DEPQLLEEVETRLRQKVTAVNPDLSLPQDIAKRVLAAPGSAEAAYGQHKQGDVASKHVEA
LKPAVAELARLEALAQSFYLRRSAKRKALAV
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccttcgaggagctgggagttatgccagagcttattaagggcatcgaagagatg
gaatggctgttgcccactcctgtgcaagcagaggcggtgccactgatcctgggcggtggg
gatgttatggtcgctgcagagacaggcagtggcaagactggtgcttttgcagtgccaatc
ttgcaggtggtgcatgaaacagtcacagccaggcagcaggaagcgggcagttccaatgtt
cccgcttcaggccctgtggactgcacattgagcaccgaggacagggatgtcgtcttcaat
gtatccgagaatgggctgagctgcagcgcgatgaccaaggggtgggcaggcgggagggca
acagtgggcgccacatcgggcaggctgtatttcgaggtcaccatgcagaacgacggcctt
tgcagagtcgggtgggcctctcgcgcggccgcttttgagatcggtcgggacaagcgcagc
tttggctttggcagcacagggaaaaagtcgcatggcggcacatttacagactacgggcgg
gcctttggcaagggggagacagtggggtgtctgctggacatgacaaccggccagatctcc
tatacagtcaatggggcatccatgggggtggcttttgagctgccggcgcagatgcgcggc
cagccgctctacccagctgtggcgctgaagggcgcgcaggcaagggccgcttttggagga
gccgatctccgttacgggccgcctgacggctgcgtcggtatcgcggacgctcccagcagc
caaatcaccagcggtgtgtgccttgcatctgcggccgcaggcgtccggacgccgtcagcg
atcatcttggagccgtcgcgtgacttggcgcagcagacgcacgacgccataacgtcgctg
aagcgacacctgacgtcggcctcgctgcagagtgtgctgctggttggtgggacccagccc
aaggaagctgtgcggcagctggagcgcggcgctgacatcgtcaccggcacaccagggcgc
atcatggactttgtggagagcggcaagctggtgctgtccagcgtcaagttctttgtgctg
gacgaggccgaccggctgctggacacgggcaaccaggacaccatcatgaagctgttctcc
cgcttccccaaggccggcatgggcgtggctcgcctgcaggtcctgatgttttcagcgacg
ctgcactcggtcgaggtgaaagacattgccgcgcgcatctgccaaggggctaccctcggg
gcgcatctgcatctgcagggccgggaggcagtgccagacacagtggaccatgtgctggtg
gctgtggacccaaaggccgatcgctcctggctgcagacaaccccagaggtgcccacagac
aacatccacgcctttgacagcagcggcccatccgtggacacagccgataactggagcctt
gccttgaagaggctcaagccgcgcgtgctgcaccgcctcatcgacgcctacaagatggag
caatgcctggtcttctgccgcaccaactttgactgcgacaacttggagaagttcctcaac
ggcctcggcggcggcggcggcggccggtgggccggccggcgcgagagcggcaaggagaac
ccgtactcctgctgcgtgctggcaggtgcccgcagcaccgaccagcgcagggaggccctg
caggcgttcaagcagggggaggtccgttttttgatctgcacagatgtggcggcgcgcggg
ctggacatctctggactgccctatgtggtcaacctgacgctgcccgaccgggcagaggac
tacatccaccgcgtcggccgcgtcgcagggcgcgcagagaagctgggcctggcgataagc
ctggtgtcgacggtgaaggagaaggtgtggtactgctccaagaagggctaccggccgtgg
gagcggcccagcaagaaggacgtcaaggaccagaaagagggcggccacaccatctggtac
gacgagccgcagctgctcgaggaagttgagacgcggctgcggcagaaggtgacggcggtg
aatccagacctgagcctgccgcaggacattgccaagcgcgtcttggccgctccggggtcg
gcagaggccgcctatggccagcacaagcagggggacgtagccagcaagcatgtggaggca
ctgaagccggctgtggcagagcttgcgcggctggaagctcttgcacagagcttctacctc
cggcgcagcgccaagcgcaaggcactggctgtgtga
DBGET
integrated database retrieval system
