Coccomyxa subellipsoidea: COCSUDRAFT_14599
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Entry
COCSUDRAFT_14599 CDS
T02914
Name
(RefSeq) ribosomal protein S5 domain 2-like protein
KO
K12589
exosome complex component RRP42
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_14599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_14599
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
COCSUDRAFT_14599
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
COCSUDRAFT_14599
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
zf-nanos
cEGF
Motif
Other DBs
NCBI-GeneID:
17042101
NCBI-ProteinID:
XP_005648647
JGI:
14599
UniProt:
I0Z0D4
LinkDB
All DBs
AA seq
293 aa
AA seq
DB search
MIGKDLKQYTVQGFQDDLREDGRSCRDVRPLKLALGVLQQCSGSARCSLGNTEVLVGVKV
EIGVPLEETPDCGGLQVTVECSPCAGPSYQGKSGEDLGVELTKSLERYLKPGRSGKGGCV
DLRALSIVSGRRCWILCIDALILAADGSVLDALSVAAKAALQDTRIPLVEVGATENPDEE
PELELDDDPAHATQVDTSSVPVIVTVYIVMFQAGRAYILDASSQEETCIDSAVQVAVNGG
GKLCGLFKVGPSAVNPAVLQVRLHFNILISCNSLCAISCQFCGAAGTAAASIY
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgattgggaaggacttgaagcaatacactgtgcaaggcttccaggatgatctgcgggag
gatgggcgttcctgcagggacgtgcggccacttaagttggctttaggtgttttgcagcag
tgtagtggctctgcccggtgttctctgggcaacaccgaagtgctggtcggggtcaaggtt
gagattggggttcccctcgaggaaacgccggactgtggcggcttgcaagtgactgtggag
tgcagcccttgtgctggtcccagctatcagggaaagtcaggcgaggacttgggggtcgag
ctcacgaagagcttggagcgttatctgaagcctgggcgcagcggcaaaggtggctgtgtg
gacctgcgagccttgtcgattgtgagcggcagaaggtgctggattctgtgcatagatgcg
ctcattctggctgcagatggcagcgtgctggatgcactcagcgtagccgcaaaggcagcg
ctgcaggacaccaggatccccctggtggaggtgggggcgacagagaatccagatgaggag
cctgaacttgaactagatgacgatcctgcgcacgccacgcaagtagacacgagcagtgtc
cctgtcatcgtcactgtgtacattgtcatgtttcaggcgggccgtgcctacatcctggat
gcatcctcccaggaagagacatgcatagactctgcagtccaagtggctgtgaacggcggt
ggtaaattgtgtggtctcttcaaggtcgggccatcagctgtcaatcctgcggtgttgcag
gtacggctgcacttcaatatattgatttcctgtaattcattgtgtgccatcagctgtcaa
ttctgcggtgctgcaggtacggctgcagcttccatatattga
DBGET
integrated database retrieval system
