Coccomyxa subellipsoidea: COCSUDRAFT_16341
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Entry
COCSUDRAFT_16341 CDS
T02914
Name
(RefSeq) DEAD-domain-containing protein
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_16341
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_16341
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_16341
Spliceosome [BR:
csl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
COCSUDRAFT_16341
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCSUDRAFT_16341
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
17040669
NCBI-ProteinID:
XP_005647226
JGI:
16341
UniProt:
I0YWB3
LinkDB
All DBs
AA seq
662 aa
AA seq
DB search
MSSVVYLQPSGRAAPGKGSNGRPEAHSESKDSDESDEEVSDDEDAPLPGEIDDDDSDVAD
EDAVDIDSEEEDLPEADDDDDDAEESDEQEEQQIEESESDAEDFYAQTPDGTKFSASAFS
DLHLSRPLLKACTALGYINPTPIQAACIPLALAGRDICGSAITGSGKTAAFALPLLERLL
FRNRRIAATYGLVLTPTRELAVQVHSMITNLAQFTDIRIALVVGGLSLQVQSATLRTSPE
VVVATPGRLIDHLRNTQSVGLEDLQALVLDEADRLLQMGFSEEIKEVLRLTPRKRQTLLF
SATMTEEVRDLAALSLQRPVRLAADAAGAAPRSLTQEIVRFKGAAGPAAREGTLLALCAR
SFRLGRTIVFFSTKHSAHRAKILFGLAGLPPAAELHGNMTQAARLESLEKFRKGEAAFLL
ATDVAARGLDILGVDAVINYDAPPALSAYLHRIGRTARAGRAGRAVTFADDSTRSLLKDV
VKKTGAKLLIRSVQPEIVAQWTQRIHSLGRDIARIDLAEREEMELRKAEMEAQKAENMVA
HEAEIAARPPRTWFQTAKEKVASVDRSALSTAAHSLLCIHLMSRITAEICVLMSRTPRRN
HALSTRGCPQRRPVAALLFMQIHACLVPGRGSSPFRWSGLAGWFSEGLRVCAVASSCFLS
GC
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggttgtgtatttgcagccgtcaggaagggccgctcctgggaagggctcaaac
ggcagacctgaggcacactcagagagcaaggactctgatgagtcagatgaagaggtcagc
gatgatgaggatgcgcctctgcctggcgaaatagacgatgatgacagcgatgtggcagat
gaggacgcagttgacattgacagcgaagaggaggatttgccagaggcagatgatgatgat
gatgatgctgaagagtccgatgagcaggaggagcagcagatagaagaaagtgagagcgac
gccgaggatttctatgcgcagaccccagacggcactaagttcagcgccagtgccttcagc
gacctgcacctgtctcgccccctgctcaaggcctgcactgctctgggctacatcaacccc
accccaatccaggcagcttgcatccctctggcactggcggggcgagacatttgtggcagt
gccatcacagggtctggaaagactgcagcgtttgcactgcctctcctggagcggttgcta
ttcaggaatcggaggattgcggccacctatggtctggtactcactcccacgcgcgagctg
gccgtccaggtgcacagcatgatcaccaatttggcgcagttcacggacatccggattgcg
ctggttgtgggcggcctctctctccaagtgcagtctgccacgctgcgtacctctcctgaa
gtcgtcgttgccactccgggacggctaatcgatcatttgcgcaacacccagtcagtggga
ttggaggacctgcaagcactggtcctggacgaggccgaccggctgctgcagatgggtttc
tcagaagagatcaaggaggtgctgcggctgacgccgcgcaagcgccagacgctgctgttc
agcgcgacaatgacggaggaggtgcgcgatctggcggcgctgtcgctgcagcggccggtg
cggctggcggctgacgcggccggcgcggcgccgcggtcgttgactcaagagattgtgcgg
ttcaagggggcggccgggccagccgctagagagggaacgctgctcgccctgtgcgcgcgc
tccttcagattggggcggaccatagtgttcttcagcaccaagcacagtgcccacagggcc
aagatcctgttcggcctggcggggttgccgccagccgctgagctgcatggtaacatgacg
caggccgcccgcctggaatccctggaaaagttcagaaagggcgaggcggcgttcctgctg
gcgactgatgtggcggcgcgagggctggacattctgggggtggatgcggtgataaactac
gacgcgcccccggccctgtctgcctacctgcaccgcatcggccgcaccgcgcgcgccggc
cgcgccggccgtgccgtcacctttgccgacgactccacgcgctctctcctgaaggacgtt
gtgaagaagacgggagccaagctgctgatccgctccgtgcagccggagattgttgcgcag
tggacccagcgcatccattccctgggcagagacatcgctcgcatcgacctggcggagcgt
gaggagatggagctgcgaaaggcggagatggaggcacagaaggctgagaacatggtggcg
cacgaggccgagatcgccgctcggccgccgcgcacctggttccagactgccaaggagaag
gttgcgtctgtagacaggtctgccctctccacagctgcccactccttgctttgcattcat
ttgatgagcaggatcactgccgaaatatgtgttttgatgagcaggactccccgtcgaaac
catgcattatccacaaggggttgtccacagaggaggcctgtagcagcactgctctttatg
cagatccatgcatgccttgtcccaggtcgagggtcaagccccttccgctggagtggcttg
gcaggttggttcagtgagggattgagagtttgtgcagttgcttcatcatgctttctctcg
ggatgttga
DBGET
integrated database retrieval system
