Coccomyxa subellipsoidea: COCSUDRAFT_16360
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Entry
COCSUDRAFT_16360 CDS
T02914
Name
(RefSeq) prokaryotic type I DNA topoisomerase
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03440
Homologous recombination
csl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
COCSUDRAFT_16360
03460 Fanconi anemia pathway
COCSUDRAFT_16360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csl03032
]
COCSUDRAFT_16360
03400 DNA repair and recombination proteins [BR:
csl03400
]
COCSUDRAFT_16360
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
COCSUDRAFT_16360
DNA replication proteins [BR:
csl03032
]
Eukaryotic type
DNA Topoisomerases
COCSUDRAFT_16360
DNA repair and recombination proteins [BR:
csl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
COCSUDRAFT_16360
FA (Fanconi anemia) pathway
COCSUDRAFT_16360
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Ribosomal_S27e
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
17040850
NCBI-ProteinID:
XP_005647407
JGI:
16360
UniProt:
I0YWU4
LinkDB
All DBs
AA seq
866 aa
AA seq
DB search
MSGLVPIVLLVAEKPSLALSIATFLSQSQARYRKSYLDVHEWDGKFQGRAAHFRMTSVIG
HVLSIDFPPKYQNWETTDPASLFDAPTVKTEATPKAHVCKHLQQEARGCSYLVLWLDCDR
EGENICFEVMDNTLKWMVRVPGQQVFRARFSAISAPEILAAMERLGEPNRAEAEAVDARQ
ELDLKVGVAFTRFQTRYFQGKYGNLDASVISYGPCQTPTLFFCVQRHQLITAFQPEDYWT
IRPNCGVCVFRIDVEWSRGRLFDRDVALLFQRIVTEARALRCVEVSAKEERRQRPNGLNT
VELMKTASSAMGMSPQQAMRCAEGLYTSGYISYPRTESTAYPPGFDFHEVLVEMRRHPIW
GEYAAGLMGHGAFAPPKGGHDAGDHPPITPIASATEAELGGGDDWRLYDYIARHFLGSLS
PDCVLRRTTAAFAAGNERFSATGVAPVRAGFTAVMPWKAVQGEPLPPLHEGEILPITEVE
LKQGKTSPPDYLTESELIGLMEKHGIGTDASISVHIAKVCERYVSIQSGRRLMPTELGVT
LVRGYQLIDPDLCLPLVRSHVEKQIDLIAQGLAGREAVVAHTLDQFSRKFRYFVGKIERM
DALFEASFSPLASSGKPLSKCGKCARYMKLISVRPSRMYCPTCEEVLNLPQGGSVKLYKG
LACPLDNYEIVLFSLTGPDAKTYPLCPFCYNNPPAGAMQNDGSSMRRQVAGPGAGAKPGM
PCTLCPHMGCQHSFLRKGVTPCPECDTGTVVLDPVSGPKWRLDCNLCSFMIYLPETLHAV
KLSKERCQECESVLLKLDFKKGASPLPNGETETTACVVCNEKIAALCTAKHGRSYAKRRG
GGRRGRGRGRGRGRRTGDPLMSFRDF
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcttgttcctatagtcctgctcgttgcagagaagccatcattggctctctcg
attgcaactttcctatcccaaagccaggcacgatacaggaagagctatctggacgtgcac
gaatgggacggcaagttccagggccgtgcagcccacttcaggatgacatcagtcatcggc
catgtcctatccattgacttcccgcccaagtaccagaactgggagaccacagaccccgcc
tccctcttcgatgcccccactgtcaagactgaggccacgcccaaggcgcatgtgtgcaag
cacctgcagcaggaagcgcgggggtgctcctacctcgtgctgtggttggactgcgacagg
gagggcgaaaacatctgcttcgaggtgatggacaacactctgaagtggatggtgagggtg
ccgggacagcaggtgttccgcgcgcgcttctctgccatcagcgcccctgagatactggcc
gccatggagaggctgggggagcccaacagggcggaggcagaggcggtggatgcgcggcag
gagctggacctgaaagtcggcgttgccttcacccgcttccagacccgctacttccagggc
aagtatggaaacctggacgcatcggtgatcagctacgggccgtgccagacgccgacgctg
ttcttctgcgtgcagcgccaccagctcataactgcctttcagccggaggactactggacc
atccggcccaactgtggcgtctgtgtgttcagaatagatgtggagtggtcccgcggtcgc
ctatttgaccgggacgtggcgctgctgtttcagcgtattgttacagaggcgcgtgctctg
cgctgcgtggaagtctctgccaaagaggagcggcggcagcggcccaacgggctgaacacg
gttgagctgatgaagacagcctccagcgcgatgggcatgtccccgcagcaggccatgcgc
tgtgcagagggcctgtacaccagcggctacatctcctacccgcgcacagagagcaccgcg
tacccgcccggctttgatttccacgaggtgctggtagagatgcggcggcaccccatctgg
ggggagtacgccgccggcctcatgggccacggcgccttcgctcctcccaaggggggccac
gacgcgggggaccaccccccgataacgccgatagcctcggctacggaggcggagctgggc
ggcggcgacgactggcgcctctacgactacattgcacgccacttcctcggctcgctctcc
ccggactgcgttctccggcgcaccaccgccgccttcgccgccggcaacgagcggttcagc
gccaccggtgtcgcccccgtgcgtgctggcttcactgctgtaatgccctggaaggctgtg
caaggggagcctctgccgccgctgcatgagggcgaaatcctgccaatcactgaagtggag
ctgaagcagggcaagacatcgcccccagactacctgaccgagagcgagctaatcgggctc
atggagaaacatggcatcggcaccgacgcctccatatccgtccacattgccaaagtgtgc
gaacgctacgtcagcatccagtcagggcggcgactcatgcccacagagctgggggtgacc
cttgtgcgcggctaccaactcatcgacccagacctctgccttcccctggtgaggtcccat
gtggagaagcagatcgatctgatagcgcagggcctcgcagggagggaggcagtggtggcg
cacacgttggaccaattttcgcgcaagttccgctactttgtcgggaagattgagcgcatg
gacgccctcttcgaggcctccttctcgccgctggcctcctctggcaagccgctgagcaag
tgcggcaagtgcgcgcgctacatgaagctcatctccgtgcggccctccaggatgtactgc
cccacctgcgaggaagtcctcaacctaccccaggggggatcggtgaagctgtacaagggg
ttggcgtgcccgctggacaactatgagattgtgctcttctcgctgactggaccggacgcc
aagacctacccgctgtgcccgttctgctacaacaatccgcccgccggagccatgcagaat
gacggctcaagcatgcgtcgccaggtcgcgggcccgggcgcgggcgcgaagccgggcatg
ccttgcacactgtgcccccacatgggctgccagcacagcttcctgcgcaagggcgttacc
ccctgcccagagtgtgacactggcacagtggtgctggaccctgtctccggccccaagtgg
cgcctggactgcaacctctgcagcttcatgatctacctgcccgagacgctgcacgccgtc
aagctgtccaaggagcgctgtcaggaatgcgagtcggtgctgctgaagcttgacttcaag
aagggggcgtcccctcttcccaatggggagacagagacgacagcatgcgtggtgtgcaac
gagaagatagcggcgctgtgcacagccaagcatgggcgcagctacgctaaacggcgtggc
ggcggccggcgcggccggggccgggggcgcggccgcggccgccgcaccggcgacccgctc
atgagcttccgggacttctag
DBGET
integrated database retrieval system
