KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_18646
Entry
COCSUDRAFT_18646  CDS       T02914                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl04120  Ubiquitin mediated proteolysis
csl04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    COCSUDRAFT_18646
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    COCSUDRAFT_18646
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csl04121]
    COCSUDRAFT_18646
Enzymes [BR:csl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     COCSUDRAFT_18646
Ubiquitin system [BR:csl04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    COCSUDRAFT_18646
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     COCSUDRAFT_18646
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st WDR55 Beta-prop_EIPR1 EIF3I Beta-prop_TEP1_C Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_IFT80_2nd WD40_like
Other DBs
NCBI-GeneID: 17038344
NCBI-ProteinID: XP_005644912
JGI: 18646
UniProt: I0YPP9
LinkDB
AA seq 349 aa
LSAFTSDLSKFVRYSKLKVKATLQYGDMMHSADMLCSISFDRDDEYFATAGVSRRIKVYA
TSDVLESNSAVHCPRLEMASRSKLSCVVWNSYIKHLLLAADYDGCLALWDAETNTCTATF
EEHAKRVWSADFSQSDPTRFVSGSDDGTVRLWSIREEAPTAVIDAKANVCSVQFSPVSSH
LLAFGSANYRVYLYDLRQMRVPLAVIGCHSKAVSYVRWMDGSHLVSASTDNQLKLWDLAG
AGRHSRHQEWRPQNVLTGHTNERNFVGLSVTSDGYIACGSEDNSVYTYTSTLPTPLARHC
FSSKEGCADSGEDLAADSHQFVSSVCWSRKGHTLLAANSQGTLKLLELD
NT seq 1050 nt   +upstreamnt  +downstreamnt
ctgtcggccttcaccagcgacctcagcaagtttgtgcgctacagcaagctcaaggtgaag
gcaacgctgcagtacggcgacatgatgcactctgcagacatgctctgctcgatctccttc
gatcgcgacgacgagtatttcgccaccgccggagtctctcggcgcatcaaggtgtatgcc
acgtcagacgtgctggaatcaaacagcgcggtgcactgcccacggctggagatggcgtcg
cgctccaagctgagctgcgtggtgtggaactcctacatcaagcacctcttactcgccgct
gactacgacggctgcctggcgctgtgggatgctgagaccaacacttgcactgccactttt
gaggagcacgccaagcgcgtctggagcgccgatttctcccagtcggatccgacccgcttt
gtgtccggcagcgatgacggcacagtgcggctgtggagcatccgggaggaggcacccacg
gctgtgattgatgccaaggcgaatgtttgcagcgtgcaattcagccccgtctcgtcccac
ctgctggccttcggctctgccaactaccgagtgtatctgtacgacctgcgccagatgcgg
gtgcccctggcggtgatcgggtgccactccaaggcggtgtcttatgtccgctggatggac
ggctctcacctcgtgtcggcctccaccgacaaccagctcaagctgtgggacctggctgga
gccggtcgccacagccggcaccaggagtggcggccccagaacgtgctcacagggcacacc
aacgaacgcaacttcgtgggcctctcggtgacatcagacggctacatagcgtgcgggagt
gaagacaacagcgtgtacacatacacctccactctccccacgcccctcgcccgccactgc
ttctccagcaaggagggctgcgctgactcgggggaagatctggcggccgactcgcaccag
tttgtgagcagcgtctgctggagccgcaagggccacaccctgctcgctgccaactcacaa
ggcaccctcaagctgctggagctggactga

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