Coccomyxa subellipsoidea: COCSUDRAFT_22852
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Entry
COCSUDRAFT_22852 CDS
T02914
Name
(RefSeq) RNA helicase 2
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03013
Nucleocytoplasmic transport
csl03015
mRNA surveillance pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_22852
09122 Translation
03013 Nucleocytoplasmic transport
COCSUDRAFT_22852
03015 mRNA surveillance pathway
COCSUDRAFT_22852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_22852
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_22852
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_22852
03012 Translation factors [BR:
csl03012
]
COCSUDRAFT_22852
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_22852
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
COCSUDRAFT_22852
mRNA cycle factors
Stress granule specific factors
COCSUDRAFT_22852
Spliceosome [BR:
csl03041
]
Complex C
Other components
EJC/TREX
COCSUDRAFT_22852
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
90S particles
Helicases
COCSUDRAFT_22852
Translation factors [BR:
csl03012
]
Eukaryotic type
Initiation factors
eIF-4
COCSUDRAFT_22852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Cas3-like_C_2
NAT10_TcmA_helicase
UvrD-helicase
AAA_30
CMS1
Motif
Other DBs
NCBI-GeneID:
17042478
NCBI-ProteinID:
XP_005649020
JGI:
22852
UniProt:
I0Z1F7
LinkDB
All DBs
AA seq
406 aa
AA seq
DB search
MSKARPRAAPAHTDYVADEGLTFESEENLKVVTAFEGLNLKEPLLRGVYQFGFEKPSAIQ
QRAILPIVQGRDVIAQAQSGTGKTSMIAISLAQLLDPKLNEPQSLILSPTRELAAQTTKT
IQAVAEFMKVRAHTCVGGTSLGKDMSLLEAGQHIVSGTPGRVFDMIKRRCLATRSIKTLV
LDEADEMLNKGFKEQIYDVYRYLPPDTQVVLVSATLPGEVLEMTSKFMTDPLRVLVKRDE
LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVS
AMHGDMPQKERDAIMGEFRGGHSRVLISTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagcaaggccgcgcgcggcacctgcacacacagattatgtcgcagatgagggg
ctcaccttcgagtcggaagaaaacctgaaggttgtgacagcctttgagggtctgaatctg
aaggagcccttgctgcgtggcgtgtatcaatttggcttcgagaagccctcagccatccag
cagcgagccatcctccccatagtgcagggccgcgatgtgatcgcgcaggcgcagtctggc
acagggaagacatctatgattgccatctccctggcacaactcctagacccaaagctcaac
gagccgcagagtctcatattgtcacccaccagagaactggcggcgcagaccacgaagacc
atccaggccgtggctgagtttatgaaggtcagggcgcacacatgcgttggcggcacaagc
ctgggcaaggacatgtccttgttagaggctgggcagcacatcgtgtcgggaacccctgga
agggtctttgacatgatcaagcggcgctgcctggccacacggtccatcaagacacttgtg
ctggatgaggcggacgagatgctgaacaagggcttcaaggagcagatctacgacgtctac
cgataccttccccctgacactcaggtggtgctggtgagtgccacgctgccaggagaggtg
ctggagatgaccagcaagttcatgacagacccgctcagggtcctcgtcaagcgtgatgag
ctgactctcgagggcatcaagcagttctttgtggcggtggagaaggaggagtggaagttt
gacactctgtgcgacctgtacgacaccctcaccatcacacaggccgtcatcttctgcaac
accaagaggaaggtggactggctgacggagaagatgcggcagaacaacttcacagtgagc
gcgatgcacggcgacatgccgcagaaggagcgcgacgcaattatgggcgagttccgcggc
ggccactcgcgcgtcctcatctccaccgacgtctgggcccgcggccttgacgtgcagcag
gtgtcgttggtgatcaactacgacttgcccaacaaccgtgagctgtacattcaccgcatc
ggccgctccgggcgctacgggcgcaagggagtggccatcaactttgtgcgcagcgatgac
atccgcatcctgcgcgacatagagcagtactactccacccagattgatgaaatgcctatg
aacgtggcggacctgatctga
DBGET
integrated database retrieval system
