Coccomyxa subellipsoidea: COCSUDRAFT_23373
Help
Entry
COCSUDRAFT_23373 CDS
T02914
Name
(RefSeq) MiaB-like tRNA modifying enzyme
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_23373
Enzymes [BR:
csl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
COCSUDRAFT_23373
Ribosome biogenesis [BR:
csl03009
]
Prokaryotic type
ribosomal protein modification factors
COCSUDRAFT_23373
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
TRAM_2
Radical_SAM
CLP1_P
TRAM
Motif
Other DBs
NCBI-GeneID:
17042275
NCBI-ProteinID:
XP_005648821
JGI:
23373
UniProt:
I0Z0V8
LinkDB
All DBs
AA seq
509 aa
AA seq
DB search
MLGMSKMMKSSLVATTQLPHIDRRVPARTARRCQARAAPAVASEADALKVSFVSLGCPKN
VVDGEVLLGDLARNGFTVTEDRLEADCIVVNTCAFVEDAKAESLEAIMEASELKKDGQVQ
KVIVTGCLAQRYSTELAESLPEADYVVGFQNYSSLPATLRNALQPTANAGGLAEARVQVG
ESTVAFRPEADRYRLTPQHTAYLRVAEGCNHSCTFCAIPGFRGKFRSKPWQHVLDEARQL
VASGVKELNLIAEDTNQYGMDRKDGNSLAELMAELGKLEGLHWMRILYAYPSYFSDALID
EIASNPKASTPAICLLLVCKYIDIPLQHISNMTLLGMNRPPQLHTVSLLHKLRERIPELA
LRTTFISGFPGETEDQHQELLQFCRDFKFERMGAFAYSEEDGTPAAAFSEQVPEEIRQAR
RDSLISQQQDISQTFAESLVGREVDVLVEGWNEDDCLVGRTQWDAPDVDPIVFLTPTSDA
RIPPLEAGQMRRCLITGTSLFDLEAQPIL
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcatgtcaaagatgatgaagtcttctctagttgcaacaactcaactaccgcat
atcgatcgtcgagtaccagccagaactgcccgccgctgtcaagcaagagctgcgcctgct
gtagcttcagaagcagatgcattgaaggtctcctttgtgagcttagggtgccccaagaat
gtcgtcgatggcgaggtgttgctgggagacttagccagaaatgggttcacagtcacagag
gacaggctcgaggccgattgtatcgtggtcaatacttgcgcattcgttgaggatgccaag
gcagaatcgctggaggcaattatggaagcttctgagctcaagaaggacggccaagtacaa
aaggtgatcgtcacaggctgcttggcccagcggtattccacagagcttgcagagagcctg
ccagaagctgactacgtagttgggttccaaaattacagcagcctgccagcaaccttgagg
aatgcgttgcagccgacggcgaatgcaggaggacttgcagaggctagagtgcaggtgggc
gagtcaactgtggcgttccgtccagaagccgatcgctatcgtctcacaccgcagcataca
gcatacctgagagtcgccgagggctgcaaccattcctgtacgttctgcgccatccccggc
ttcaggggcaagttcagatcaaaaccatggcagcacgtcctcgacgaagcgcggcagctg
gtagcctcaggagtgaaggagctcaatctcatagcggaggacaccaaccagtatggcatg
gacaggaaggatggcaacagcctggcggagctgatggcagagctggggaagctggagggc
ctccactggatgcgcattctctacgcctacccttcctacttctccgacgccctcatagat
gaaattgcatccaaccccaaggcaagcacaccagcaatttgcttactgcttgtgtgcaag
tacatcgacatccctctgcagcacatctccaacatgacccttcttggcatgaatcgaccg
ccccagcttcacaccgtgtcgctgctccacaaactgcgcgagaggatacccgaactcgcc
ttgcgcacgacgttcatcagcggatttccaggcgagacggaggaccagcaccaggagctg
ctgcagttctgcagggacttcaaattcgagcggatgggggcctttgcctactctgaagag
gacggaacacctgctgccgcattctcagagcaggtgccggaggaaatcaggcaggcgcga
agggactccctcatcagccagcagcaggacatcagccagaccttcgcagaatcgctggtc
ggcagggaggtggacgtcttggtcgaaggctggaacgaggatgattgcttggttggtcgg
acccagtgggatgcgcccgacgttgatccaattgttttcctgacgccaacaagcgatgca
cgcataccgccccttgaggccggccagatgcggcgctgcctcattacagggacttcgctg
ttcgacctcgaggcgcagcccatcttgtga
DBGET
integrated database retrieval system
