Coccomyxa subellipsoidea: COCSUDRAFT_23819
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Entry
COCSUDRAFT_23819 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_23819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_23819
Spliceosome [BR:
csl03041
]
Complex B
Other components
Prp19-related factors
COCSUDRAFT_23819
Complex C
COCSUDRAFT_23819
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
Nup35_RRM_2
zf-CCCH
zf-CCCH_2
RRM_YTH1
zf-CCCH_4
zf-CCCH_3
zf-CCCH_10
RRM_occluded
zf-CCCH_12
Calcipressin
Motif
Other DBs
NCBI-GeneID:
17041181
NCBI-ProteinID:
XP_005647737
JGI:
23819
UniProt:
I0YXS4
LinkDB
All DBs
AA seq
464 aa
AA seq
DB search
MASNLDEVGERSDFPIVCETCLGPNPYVRMQRIEFGGECHISGRPYTVFRWRPGNDARYK
KTIICQEVAKAKNVCQVCLLDLDYSIPVQARDAALGIEDEVLPESDVGKEFKLKELENAG
TLDSSYSKTQANDKILKMQRTTPYYKRNRAPICSFFVKGECKRGAECPYRHEMPTTGPLA
EQNIKDRYYGVNDPVANKMLARVDAMPKIEAPEDREIKTLYVGGLAPEVEDQDLRDHFYP
YGEISSIKILSARHCAFVTYATRPAAERAAQELQHKLIVRGQRAKLMWGKPQEKRTLEYQ
DGMAPPEGGPQPPPMSMLPPQVAMQMGGAVPFGAPPGPNFFNLPPGGAPGQLYPSMDPSQ
AGTRAQRDGGAPGEAGPSSKRTRGPEGGYMPGPGFYGPPPGAAGFPSGPGRGGAMLPPWA
GGAGPGGFGGGPRPPPGWRPGGPPPAGVPMAAGGPAAAPSADGS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaatcttgacgaagtgggagagaggtcggactttcctatagtctgtgagaca
tgcttaggcccgaatccatatgtgaggatgcagaggatagagtttggaggggagtgccac
atctctggccgcccatacactgtcttccgatggcgcccaggcaacgatgcacggtacaag
aagaccatcatctgccaggaggtggccaaggcgaagaatgtgtgccaggtgtgcctgctg
gacctggactacagcatcccggtgcaggccagggatgctgcgctgggaatagaggacgag
gtgctgccagagagcgatgtgggcaaggagtttaaactgaaggagctggagaacgcaggc
accttggattcatcatactcaaagacgcaggcaaacgacaagatcctgaagatgcagcgc
acgacgccgtactacaagcgcaaccgcgcgcccatctgctccttctttgtgaagggcgag
tgcaagcgcggagccgagtgcccctaccgccacgagatgcccaccacagggcccctggcc
gagcagaacatcaaggaccgctattacggagtcaacgaccctgtggccaacaagatgctt
gcgcgcgtggacgccatgcccaagatcgaggcgcctgaggaccgtgagatcaagacactg
tatgtggggggcttggcgccagaggtggaggaccaggacttgagggaccacttctacccc
tacggagagatctccagcataaagatcctgtcggcgcggcactgcgcgtttgtgacgtac
gcgacgcggccggcggcggagcgggcggcgcaggagctgcagcacaagctgatcgtgcgc
ggccagcgcgccaagctcatgtggggcaagccgcaggagaagaggacgcttgagtaccag
gacgggatggcgccaccggaggggggtccccagccaccgcccatgtccatgcttccaccg
caggtggcgatgcagatgggcggagcggtgccgttcggggcgccaccgggccccaacttc
ttcaacctgccgccgggaggcgcaccggggcagctctacccctccatggatccctcgcag
gccggcacgcgcgcgcagcgcgacggcggcgcccccggcgaggccggcccgtcctccaag
cgcacgcggggccctgagggtggctacatgccgggcccgggcttctatgggccgccgccg
ggggctgcagggttcccctcggggcccggccgcggcggcgcgatgctgccgccatgggcc
ggcggggccggcccgggcggctttggtggtggcccgcggcccccgcctgggtggcggccg
gggggaccgccccccgcaggcgtgccgatggcggccggggggccggcagccgcgcccagc
gccgacggcagctga
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integrated database retrieval system