KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_23819
Entry
COCSUDRAFT_23819  CDS       T02914                                 
Name
(RefSeq) hypothetical protein
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSUDRAFT_23819
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_23819
Spliceosome [BR:csl03041]
 Complex B
  Other components
   Prp19-related factors
    COCSUDRAFT_23819
 Complex C
    COCSUDRAFT_23819
SSDB
Motif
Pfam: STL11_N RRM_1 zf-CCCH_RBM22 Torus zf_CCCH_4 Nup35_RRM_2 zf-CCCH zf-CCCH_2 RRM_YTH1 zf-CCCH_4 zf-CCCH_3 zf-CCCH_10 RRM_occluded zf-CCCH_12 Calcipressin
Other DBs
NCBI-GeneID: 17041181
NCBI-ProteinID: XP_005647737
JGI: 23819
UniProt: I0YXS4
LinkDB
AA seq 464 aa
MASNLDEVGERSDFPIVCETCLGPNPYVRMQRIEFGGECHISGRPYTVFRWRPGNDARYK
KTIICQEVAKAKNVCQVCLLDLDYSIPVQARDAALGIEDEVLPESDVGKEFKLKELENAG
TLDSSYSKTQANDKILKMQRTTPYYKRNRAPICSFFVKGECKRGAECPYRHEMPTTGPLA
EQNIKDRYYGVNDPVANKMLARVDAMPKIEAPEDREIKTLYVGGLAPEVEDQDLRDHFYP
YGEISSIKILSARHCAFVTYATRPAAERAAQELQHKLIVRGQRAKLMWGKPQEKRTLEYQ
DGMAPPEGGPQPPPMSMLPPQVAMQMGGAVPFGAPPGPNFFNLPPGGAPGQLYPSMDPSQ
AGTRAQRDGGAPGEAGPSSKRTRGPEGGYMPGPGFYGPPPGAAGFPSGPGRGGAMLPPWA
GGAGPGGFGGGPRPPPGWRPGGPPPAGVPMAAGGPAAAPSADGS
NT seq 1395 nt   +upstreamnt  +downstreamnt
atggcttctaatcttgacgaagtgggagagaggtcggactttcctatagtctgtgagaca
tgcttaggcccgaatccatatgtgaggatgcagaggatagagtttggaggggagtgccac
atctctggccgcccatacactgtcttccgatggcgcccaggcaacgatgcacggtacaag
aagaccatcatctgccaggaggtggccaaggcgaagaatgtgtgccaggtgtgcctgctg
gacctggactacagcatcccggtgcaggccagggatgctgcgctgggaatagaggacgag
gtgctgccagagagcgatgtgggcaaggagtttaaactgaaggagctggagaacgcaggc
accttggattcatcatactcaaagacgcaggcaaacgacaagatcctgaagatgcagcgc
acgacgccgtactacaagcgcaaccgcgcgcccatctgctccttctttgtgaagggcgag
tgcaagcgcggagccgagtgcccctaccgccacgagatgcccaccacagggcccctggcc
gagcagaacatcaaggaccgctattacggagtcaacgaccctgtggccaacaagatgctt
gcgcgcgtggacgccatgcccaagatcgaggcgcctgaggaccgtgagatcaagacactg
tatgtggggggcttggcgccagaggtggaggaccaggacttgagggaccacttctacccc
tacggagagatctccagcataaagatcctgtcggcgcggcactgcgcgtttgtgacgtac
gcgacgcggccggcggcggagcgggcggcgcaggagctgcagcacaagctgatcgtgcgc
ggccagcgcgccaagctcatgtggggcaagccgcaggagaagaggacgcttgagtaccag
gacgggatggcgccaccggaggggggtccccagccaccgcccatgtccatgcttccaccg
caggtggcgatgcagatgggcggagcggtgccgttcggggcgccaccgggccccaacttc
ttcaacctgccgccgggaggcgcaccggggcagctctacccctccatggatccctcgcag
gccggcacgcgcgcgcagcgcgacggcggcgcccccggcgaggccggcccgtcctccaag
cgcacgcggggccctgagggtggctacatgccgggcccgggcttctatgggccgccgccg
ggggctgcagggttcccctcggggcccggccgcggcggcgcgatgctgccgccatgggcc
ggcggggccggcccgggcggctttggtggtggcccgcggcccccgcctgggtggcggccg
gggggaccgccccccgcaggcgtgccgatggcggccggggggccggcagccgcgcccagc
gccgacggcagctga

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