Coccomyxa subellipsoidea: COCSUDRAFT_24291
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Entry
COCSUDRAFT_24291 CDS
T02914
Name
(RefSeq) cytoplasmic DExD/H-box RNA helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_24291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_24291
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_24291
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_24291
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
COCSUDRAFT_24291
mRNA degradation factors
5'-3' decay
Decapping complex
COCSUDRAFT_24291
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
COCSUDRAFT_24291
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
GDC-P
Motif
Other DBs
NCBI-GeneID:
17040369
NCBI-ProteinID:
XP_005646927
JGI:
24291
UniProt:
I0YVG4
LinkDB
All DBs
AA seq
415 aa
AA seq
DB search
MAQPAQAMEAPPAPQNWKSALKLPPKDARIRTEDVTNTKGNEFEDYVLKRELLMGIYEKG
FEKPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPLLERIDTSKNEIQAMILVPTRE
LALQTSQVCKELGKHLGVEVMVTTGGTSLRDDIMRLHAVVHIMVATPGRILDLSSKGVAK
LNKCKMLVMDEADKLLSPEFQPIIEQLISFLAAERQICLYSATFPVTVKQFKEKFLKKPY
IINLMEELTLKGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE
LGYSCFYIHAKMLQSHRNRVFHDFRNGNCRNLVSSDLFTRGIDIQAVNVVINFDFPKNSE
TYLHRVGRSGRFGHLGLAVNLITYEDRFNLFRIEQELGTEIKPIPPVIEKTLYCV
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcctgcacaagccatggaggcccctccagcccctcaaaactggaagtccgcg
ctgaagttaccaccgaaggacgccaggatccgcacggaggatgtgacaaacaccaaaggc
aacgagtttgaggactacgtgctcaagagggagcttcttatgggaatatatgagaagggt
tttgagaagccaagtcccatccaggaggagagcatcccaattgcattgactggcagggac
attctcgctcgagcgaagaacggcacgggcaagaccgctgcattcaccataccactgctg
gaaaggattgatacgagcaagaacgagatacaggctatgatcctcgtcccgacgcgagag
ttggcactccaaacgagccaggtctgcaaggaattgggaaagcatctcggagtggaggtc
atggtcaccacgggcggaaccagcctcagagacgacatcatgcgcttgcacgctgtggtg
cacatcatggtcgccaccccgggccgcatattggacctctcatccaagggcgttgccaag
ctgaacaagtgcaaaatgctcgtcatggacgaggctgataagctcctgtctccagagttc
cagccgatcatcgagcagctgatctctttcctagcagcggagcgccagatctgcttgtac
tccgctacctttcctgtgactgtgaagcagttcaaggagaaattcttgaagaagccctac
attatcaatctgatggaagagctgaccctgaagggtatcacacagtactatgcctttgtc
gaggagaagcagaaggtgcactgcctgaacaccctcttctccaagctgcaaatcaaccag
tctatcatcttctgcaactctgtcaaccgcgtggagctgctggccaagaagatcactgag
ctgggctactcctgcttctacatccacgccaagatgttgcagagccaccgcaaccgcgtc
ttccacgacttccgcaacggaaactgccgcaacctcgtctcgtcagatctcttcactcgc
ggtatcgacatccaggcggtgaatgtggtgatcaacttcgacttccccaagaactccgag
acctacctgcaccgtgtcggccgctccggtcgttttggccacctcggcctggccgtcaac
ctgatcacctatgaggaccgcttcaacctgttccgcatcgagcaggagctgggcaccgag
atcaagcccatcccccccgtcatcgagaagaccctctactgcgtctga
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integrated database retrieval system
