KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_24904
Entry
COCSUDRAFT_24904  CDS       T02914                                 
Name
(RefSeq) RNA polymerase II subunit B7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03020  RNA polymerase
csl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COCSUDRAFT_24904
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCSUDRAFT_24904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csl03021]
    COCSUDRAFT_24904
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_24904
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_24904
Transcription machinery [BR:csl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     COCSUDRAFT_24904
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCSUDRAFT_24904
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      COCSUDRAFT_24904
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 17039087
NCBI-ProteinID: XP_005645649
JGI: 24904
UniProt: I0YRT6
LinkDB
AA seq 176 aa
MLYLVELERELELQPRFFGPRLREVLEQKLISEVEGTCSGKYGFIICVTGMGHVGKGSIR
EGSGTALFKVQYSCVVLRPFKGEVLDCVVSSVNKVGFFADAGPLQLFVSNHLIPEDFEFN
ATGEPAFVSTDEAVRVQAGAEVRLRIVGTRMDASEIFCVGTIKEDYLGVISQAAGL
NT seq 531 nt   +upstreamnt  +downstreamnt
atgctttatctagtcgagttggagagggaactggaactccagcctcgattctttggacct
cgcttgcgtgaagtcttggaacagaagttgatctcagaggtggaaggcacatgcagtggg
aagtatggcttcatcatctgtgtcactggcatgggccatgttggtaaagggagcatcagg
gaaggctctggcacagcactcttcaaggtgcagtacagctgcgtggttttgagacccttc
aagggagaggtccttgactgcgtggtgtcctcagttaacaaggtggggttttttgcggat
gctggacctctgcagctctttgtgtccaaccatctcattccagaggactttgagttcaat
gccactggcgaaccggcattcgtgagcacagatgaagctgtcagggtgcaagcgggcgca
gaagtgcgcctacgaatagtgggcacgcgaatggacgccagcgagattttctgcgttggc
actataaaggaggactacttgggggtgattagccaagctgcaggcctgtag

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