KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_25989
Entry
COCSUDRAFT_25989  CDS       T02914                                 
Name
(RefSeq) spliceosome component, nuclear pre-mRNA splicing factor
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03040  Spliceosome
csl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSUDRAFT_25989
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    COCSUDRAFT_25989
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_25989
   04121 Ubiquitin system [BR:csl04121]
    COCSUDRAFT_25989
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_25989
Enzymes [BR:csl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     COCSUDRAFT_25989
Spliceosome [BR:csl03041]
 Complex B
  Other components
   Prp19 complex
    COCSUDRAFT_25989
 Complex C
   Prp19-CDC5 complex
    COCSUDRAFT_25989
Ubiquitin system [BR:csl04121]
 Ubiquitin ligases (E3)
  U-box type E3
   COCSUDRAFT_25989
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    COCSUDRAFT_25989
SSDB
Motif
Pfam: WD40_Prp19 WD40 Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_SCAP PEP5_VPS11_N Beta-prop_IFT122_1st Beta-prop_WDR75_1st U-box Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Cep57_CLD_2
Other DBs
NCBI-GeneID: 17037038
NCBI-ProteinID: XP_005643652
JGI: 25989
UniProt: I0YL39
LinkDB
AA seq 510 aa
MFCSISGTVPEEPVINRSNGQLFEKRLIEKHVQETGKDPITGEPASLEDLLPVKTNKAVK
PRPSAATSIPGLLGLFHNEWDALMLESHQQRIALIQSRQELSHALYQQDAACRVIARLTR
ERDEARSQLENAVAVARSDLANGKRTAEVEGEEEQPAKRAGIPAEVSSEMLEHSKALSKG
RKKRIMPASLATPQDIEAFSLISSHPLHKSTKGGILSIDVAQDNENLLATGGADSVVVLF
DREASRIRASLTGHTKKINSVKFFKDSSLLVSASADHTARMWRANEDGSYSAAHVLTDHS
DEVTAATLHATGSYFVTASLDATWAFYDIETGTCFTQVPSAGAGEGYTSAEFHPDGLILG
TGTANSLVRMWEARQSKAVARFDGHKGAVRGLSFSENGYYLATAADDGVKVWDLRKLKNF
KTLEAPAGTAAGAPLAVGFDFSGQNLAIGGSDARVVGVKQDWAALFSLSAALGNKGVSAV
KWSHDSRHLFVGSTDHNLRIFGGDASAMAS
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgttttgctctatctctggaacagtgcctgaggagcctgtgatcaacagaagtaatggg
caactttttgagaagcgtctcatcgagaagcatgttcaggaaactggcaaggatcccatc
actggcgaacctgcttctttggaagacttgctacccgtgaagacaaacaaggctgtgaag
ccaaggccgtctgcagccaccagcattccaggcttgctcggcctgttccacaatgagtgg
gatgcgctcatgctggagtctcaccagcaacgcatcgccctgatccagtccaggcaggag
ctgtcgcatgcattgtaccaacaggatgctgcctgccgcgtcatcgcaaggttgacgcga
gagcgcgatgaggcccgatcgcagctggaaaatgcggtcgccgttgcgcgctcggatctg
gcgaacggcaagcgcacagccgaggtggagggcgaagaggagcagcctgctaagcgggcg
ggcatccctgcagaagtgtccagcgaaatgctggagcacagcaaagcgctgtccaagggg
cgtaagaagcggatcatgcctgccagcctcgccacaccccaggacatcgaggccttctcc
ctcatcagcagccaccccctgcacaagagcaccaagggaggcatcctgtccattgacgtc
gctcaggacaacgagaaccttctggcgacgggaggcgctgactcagtggtggtgctgttt
gaccgggaggcgtcgcgcatccgcgcctcgctcacgggccacaccaagaagatcaacagt
gtgaagttcttcaaggactcctcgctcctggtgtcggcctccgccgaccacactgcgcgc
atgtggcgcgccaacgaggacggctcctactcagcggcccacgtcctcacggatcacagt
gatgaggtcacagccgccacgctgcacgccacgggctcctactttgtgaccgcctccctg
gacgcgacatgggcgttctatgatatcgagacaggcacctgcttcactcaggtgccttcc
gcgggcgccggagagggctacaccagcgcagagttccatcctgatggcctcatccttggc
acaggcacagcaaactccctggtccgcatgtgggaggcgcgccagtcaaaggccgtggcg
cggtttgacgggcacaagggagcggtgcggggcctgtccttcagcgagaacggctactac
ctggccaccgcggccgacgatggcgtcaaggtgtgggacctgcgcaagctcaagaatttc
aagacgctcgaggctccggccggcacggccgccggcgcgccgctcgccgtcggcttcgac
ttcagcgggcagaacctggcgattggcggcagcgacgcgcgcgtcgtcggcgtcaagcag
gactgggccgctctcttctcactgtcggccgccctcggcaacaagggggtgtcggctgtg
aagtggagccatgactcgcgccatctgtttgtgggttccacggaccacaatctgcgcatc
tttgggggcgatgcatctgcaatggccagctag

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