Coccomyxa subellipsoidea: COCSUDRAFT_27128
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Entry
COCSUDRAFT_27128 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K12855
pre-mRNA-processing factor 6
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_27128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_27128
Spliceosome [BR:
csl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
COCSUDRAFT_27128
Complex C
U5 SnRNP specific factors
COCSUDRAFT_27128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
PRP1_N
TPR_19
HAT_PRP39_N
Suf
TPR_16
TPR_17
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_2
HAT_Syf1_CNRKL1_C
TPR_8
ARM_TT21_2nd
CP12
TPR_21
DUF2031
Motif
Other DBs
NCBI-GeneID:
17044627
NCBI-ProteinID:
XP_005651161
JGI:
27128
UniProt:
I0Z7J8
LinkDB
All DBs
AA seq
947 aa
AA seq
DB search
MAGVHTPSAPGSQKPPVVSFNSMPVPANYVPGLGRGATGFTTRSDIGPARMAPEMPVRSA
APGAPPAPAAKPAPKPAENDAEDDSKFDEFMGNDTGALAGTFGEYDQDDKEADEVWEAID
TFMDQRRKDQREKRLKDEIEKYRKENPKITEQFAPFKRKLAEVSLSEWEAIPEIGDYTQH
KRNKMQARGLLCLLHLCLIFTPTPDNLLTKKLAESENTTTLDTRGGFDGLATPGGLSTNL
TDIGEGRRKVVSINLDRMADSVSGQTVVDPKGYLTDLNSITLTSDAEIGDIKKARTLLKS
VINTNPKHAPGWVAAARLEELAGKLAEARKLIMKGCELCPTSEDVWLEAARFQTQDNAKA
LLARGVAANPTSVKLWMQAARLETDDAAKSRVLRRALERIPTSVRLWKAAVELANQDDAR
VLLSRAVECCPQHVELWLALARLESYENARKVLNKARQAIPTDASIWITAAKLEEAQGNT
HMVEKIIDRGIISLEANNVVIKREDWLKEAEAAEQANPPNVVTCRAIVKTVIGNGVEEED
RKITWKADAEDCLKRGMVETARAIYTHALQVFPGKKSVWINAAKLEKEHGTPETLDAMLK
KAVSYCPQSEVLWLMAAKEKWVAGDVEAARHILSEAFSANPDSEAVWLAAFKLEFENDEP
QRARALLARARATPTASTRRVWMKSAIVERELGNAAEERQLLQEGIKKFPGFHKLYLMLG
QLEERQGRVEAARASYLDGLKRCMDSVPLWRSIARLEEAAGSVAKARALLEQARLKNPKN
EELWLAAVRTEQRAGNVKAAEALMAKALQDCPASGPLNAEAVAMAPRPQRRSRSLDALKR
CNDDPHIIAAVAQLFWNDRKVEKARSWFNRALLLKPDIGDFWALLYKFECQFGTPELQAA
VVERCKKADPRHGERWQRMSKNPENAHKPTDFILKKVVLDLDKEPPP
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgtacatacaccaagcgctccagggtcgcagaagcctcccgtcgtgagcttc
aactcaatgcctgtcccagcaaattatgtcccaggcttgggacgtggtgccactggattc
accacccggtccgatattggaccagcgaggatggctccagagatgccggtaagatcagca
gcaccaggagctcctccagcaccagctgcaaagcctgcgccgaagccagcagagaacgat
gcggaggacgacagtaagtttgatgaattcatgggcaatgatactggagcgcttgctggc
acttttggagagtatgaccaggatgacaaagaagcagatgaggtatgggaagccattgat
acattcatggaccagaggagaaaggatcagagagaaaaacgcttgaaggacgagattgaa
aagtataggaaggagaatcctaagatcacagagcaatttgcacccttcaagaggaaactg
gcggaagtgagcctgtcagagtgggaggccatccccgaaattggagattacacgcagcac
aagcgcaacaagatgcaggcacgaggcctcctctgccttctgcatctgtgccttatattc
acaccaacgccggacaatctcttgacgaagaagcttgccgagtctgagaacacaaccacc
ttggacacccgtggaggctttgacggcctggctactcctggtggtctcagcacgaacctg
acagacataggggaggggcggcggaaggtggtgagcatcaacctggaccgcatggcggac
agcgtgtcggggcagacggtggtggaccccaagggctacctgacagacctcaactccatc
acgctgacgagcgatgcggagattggggacatcaagaaggcgcgcacgctgctcaagtcc
gtcatcaacaccaaccccaagcacgcccccggctgggtcgccgccgcccgcctcgaggag
ctggcagggaagctggcggaggcacggaagctgataatgaaggggtgcgagctgtgcccc
accagcgaggacgtgtggctggaggcagcgcgcttccagacccaggacaacgccaaggcg
ctactggcgcgcggcgtggctgccaaccccacctccgtcaagctctggatgcaggctgct
cggctggagacagacgatgcggccaagtcgcgcgtgctcaggagggctctggagcgaatt
cccacctctgtgcggctttggaaggccgctgttgagttggccaaccaggacgatgcccgt
gtgctgctgtcacgtgctgtggaatgctgtccacagcatgtggagttgtggctggcactg
gcacggctggagagctatgagaatgccaggaaggttctcaacaaagcccggcaggccata
ccaacagatgcatccatttggattacagccgcaaagctggaggaagctcagggcaacacg
cacatggtggagaagattattgatcgcggtatcatctccttggaggccaacaacgtggtc
atcaagagggaagattggctaaaggaagcggaggcggcagagcaggccaatccacccaat
gtggtcacgtgcagggccattgtgaagacagtcattggcaatggggtcgaggaggaagat
cgcaagatcacctggaaggcagatgcagaggactgcctcaagcgcgggatggttgagacg
gcgcgcgccatctacacgcatgcactgcaagtgttcccgggcaagaagtccgtctggatc
aacgccgcgaagcttgagaaggagcatggcacaccagagactctggatgctatgctcaaa
aaggccgtgtcctactgcccacagagcgaagtgctgtggctgatggcggcaaaggagaag
tgggtggcgggcgacgtggaggcggcgcggcacattctatcggaggccttcagcgccaac
ccggacagcgaggcggtgtggctggccgcgttcaagctcgagtttgaaaacgacgagccc
cagcgcgcgcgtgccctgctggcccgtgcccgcgccacgcccaccgcatccacgcgccgc
gtttggatgaagtccgccatcgtcgaacgcgagctcggcaacgccgccgaggagcggcag
ctgctgcaggagggcataaagaagttcccgggcttccacaagctgtacctgatgctgggc
cagctggaggagcggcagggccgggtggaggcagcgcgcgcctcctacctggacggcctc
aagcgctgcatggacagcgtgcccctctggcgctccatcgcgcgcctggaagaagccgct
ggctccgtcgccaaagcgcgcgccctcctcgaacaggctcggctgaagaacccgaaaaac
gaggagctgtggctggcggcggtgcgcacggagcagcgggcaggcaacgtcaaggcggct
gaggcgctgatggccaaggcgctgcaggactgccctgccagcgggccactcaatgcagag
gccgtggccatggcgccccggccgcaacgccgcagccgctcgcttgacgccctgaagcgc
tgcaatgatgacccccacatcattgccgctgtcgcgcagctcttctggaacgaccgcaag
gtggagaaggcgcggagctggttcaacagagcgctgctgttgaagccggacatcggggac
ttctgggcgctgctgtacaagttcgagtgccagtttgggacgcccgagctgcaggccgct
gtggttgagcgctgcaagaaggccgacccacggcatggcgagcgctggcagcgcatgtcc
aaaaacccggagaatgcgcacaagcccacagacttcattctaaagaaggttgtcctggat
ctagacaaggagccgccaccttga
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integrated database retrieval system
