KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_27999
Entry
COCSUDRAFT_27999  CDS       T02914                                 
Name
(RefSeq) CCR4-associated factor
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCSUDRAFT_27999
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_27999
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCSUDRAFT_27999
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     COCSUDRAFT_27999
SSDB
Motif
Pfam: CAF1 RHG29_45_N
Other DBs
NCBI-GeneID: 17043432
NCBI-ProteinID: XP_005649974
JGI: 27999
UniProt: I0Z461
LinkDB
AA seq 284 aa
MVVEGVWKTKSGEDLRVREVWQENLDEELEIIRNVVDDYPFLAMDTEFPGVVARPVGPFK
NSGEYHYQTLRCNVDMLKLIQLGLTFSDAKGELPRWKGELCVWQFNFREFKQSEDMFAQD
SIELLKDSGIDFARNEARGIEVHRFGEVLMSSGIVLNEEIQWVTFHSGYDFGYLLKVLTC
QPLPAVEAEFFELLQIYFPNVYDIKYLMKFCGNLHGGLNKLAETLDVERIGPQHQAGSDS
LLTSKTFHKLIDTLFNGIDGVLKHRGVLYGLGSDGNNEIILNHD
NT seq 855 nt   +upstreamnt  +downstreamnt
atggttgttgaaggggtttggaagacaaaatctggcgaagacctacgggtgagggaagta
tggcaggagaatttggacgaggagctggagattattcgcaatgttgtggacgactaccct
ttcctagccatggacactgagttccctggagtggtcgcgaggccagtgggacctttcaaa
aacagtggagagtatcattaccagaccctgaggtgcaatgtggacatgctgaagctcatc
caattagggctcaccttctctgatgccaaaggagaattgcctcgatggaagggggagctc
tgtgtctggcagttcaacttcagggagttcaagcagtcagaggacatgtttgcccaggac
agcattgagctcctgaaggactctggcatagacttcgcgcggaatgaggccaggggtatt
gaggtgcaccggtttggagaggtcctcatgtcatccggcattgtgctgaacgaggagatc
caatgggtgacattccacagcgggtatgactttggctacctcctaaaggtgctcacctgc
cagccgcttccggcagtggaggcggaattctttgagctcttgcagatctactttcccaac
gtgtacgacatcaagtacctgatgaagttctgcgggaacctgcatggcggcctcaacaag
ctggcagagacgctggacgtggagaggatagggcctcagcaccaggccggctctgacagt
ctgctcacctccaagaccttccataagctcatcgacacgctgttcaacggcatcgatggc
gtgctgaagcacagaggggtgctgtatgggctgggcagtgacggcaacaacgagatcatc
ctcaaccatgactga

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