Coccomyxa subellipsoidea: COCSUDRAFT_28085
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Entry
COCSUDRAFT_28085 CDS
T02914
Name
(RefSeq) splicing factor, component of the U5 snRNP and of the spliceosome
KO
K12856
pre-mRNA-processing factor 8
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_28085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_28085
Spliceosome [BR:
csl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
COCSUDRAFT_28085
Complex C
U5 SnRNP specific factors
COCSUDRAFT_28085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
17043636
NCBI-ProteinID:
XP_005650078
JGI:
28085
UniProt:
I0Z4G5
LinkDB
All DBs
AA seq
2308 aa
AA seq
DB search
MCVQARKWQQLNSKRYGEKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSRKFRHDKRVYL
GALKFVPHAVYKLLENMPMPWQQQVKHVKVLYHITGAISFVDEIPRVIEPVYIAQWGTMW
IMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIELELDEEEDAAVYEWFY
DDKPLQYTKFVNGASYRRWRLPLPVMSALYRLGGQLLSDLTDQNYFYLFNTNAFITAKSL
NMAIPGGPKFEPLFRDMDTRDEDWNEFNDINKLIIRSPIRTEYKVAFPYLYNNRPRKVRL
SPYHYPMVMYIKMEDPDLPAFYYDPLIHPIAFYKSDAPTGTEALDDDEEDAFTLPEDVNP
FLEETPLYTDNTAQGIALLWAPHPFNKRSGLTRRAVDIPLVNSWFHEHCPQNNPVKVRVS
YQKLLKLFVLNKLHHRPPKNMKKKSLFKALRATKFFQSTELDWVEAGLQVCRQGYNMLNL
LIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRL
GNVDAFQLADGLQYTFSHVGQLTGMYRYKYKLMRQIRMCKDLKHLVYYRFNTGPVGKGPG
VGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRQSKGVAKTVTKQRIESHFDLELR
AAVMHDILDMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKQK
ADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLYLKAEQERQHNYLKDGPYVTPEEA
VAIYTTTVHWLESRKFSPIQFPPLSYKHDTKLLILALERLKEQYTVAVRLNQQQREELGL
VEQAYDNPHEALSRIKRHLLTQRTFKEVSIEFMDLYSHLIPVYEIEPLEKITDSYLDQYL
WYEADKRHLFPNWVKPADSEPPPLLVYKWCQGINNLADIWDTSNGECVVMMQSELEKMFE
KVDLTLLNRLLRLILDHNIADYMTAKNNVVIAYKDMAHTNAYGLIRGLQFASFIVQYYGL
VLDLLMLGLTRASEIAGPPQIPNEFLTFRDTRTETRHPIRLYSRYVNKIHILFRFSADEA
KDLIQRFLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRATFWDMKNRLPRSLT
TLDWNNSLVSVYSQDNPNLLFSMSGFEVRILPKIRMVAEGFANKDGVWSLQNEATKERTA
QAFLRVDDEALKSFENRIRQVLMSSGSTTFTKVANKWNTALIGLMTYFREATVHTQELLD
LLVKCENKIQTRIKIGLNSKMPSRFPPVIFYSPKEIGGLGMLSMGHILIPQSDLRYSQQT
DLGITHFRAGMSHEEDQLIPNLYRYIMPWEAEFTDSQRVWAEYALKRQEAQAQNRRLTLE
DLEDSWDRGIPRINTLFSKDRHTLAYDKGWRVRTDFKQYQLLKQNPFWWTHQRHDGKLWN
LNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGL
NQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVH
ESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYRWPMSKPSLMA
DTNDMMDQKPSNKYWVDVQLRWGDYDSHDVERYTRAKFLDYTTDNMSIYPSPTGVMIGID
LAYNLHSAFGNWFEGVKPLIIQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQ
NYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSV
WAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKRIIVSRKGMLDPLEVHLLDFPNIVITG
SELQLPFQAALKVEKFGDLILKANEPQMVLFNIYDDWLKTISSYTAFSRLILILRALHVN
VDKARMLLRPDKSIITEPHHVWPTLTDEQWIKVEIALKDLILADYSKKNNVNVGALTQSE
IRDIILGAEITPPSMQRQQIAEIEKQAAAGTQMTAVTTETQNVHGDKLIVTSSSPYEQQM
FGSKTDWRVRAISATNLHLRVNHIYVNSEDIRETGFTYVMPKNVLKKFICIADLRTQIAA
FIYGVSPPDNPQVKEIRAVVMVPQYGSHQQVNLPAALPEHDYLRDLEPLGWLHTQPNELL
QMSAQDVTMHAKMLEANKSWDGERCVVITASFTPGSCSLTAYKLTPGGYEWGRTNKGDLA
NPVGYSPNHYEKVQMLLSDRFMGFYMVPDVGSWNFNFQGVKHQPTMKYGLRLANPKEFYH
EIHRPKHFLDFSTSEDIEPEADRENHFD
NT seq
6927 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtccaggcgaggaagtggcagcagctcaattccaagaggtatggggagaagcgg
aagtttgggtttgtggaggcgcagaaggaggatatgcctcctgagcacgtcaggaagatc
atcagggatcatggtgacatgtcttccagaaagttccgccacgacaagcgggtgtatctg
ggagcgctcaagtttgtgccgcatgctgtgtacaagctgctggagaacatgcccatgccg
tggcagcagcaggtgaagcacgtgaaggtgctgtaccacatcacgggcgcgatcagcttc
gtggatgagatccctcgcgtcatcgagccggtctacatcgcgcagtggggcaccatgtgg
atcatgatgcggcgcgagaagcgcgacaggcggcacttcaagcggatgcggtttccgccg
tttgacgacgaggagccgcccctcgactatgcagacaacttgctggatgtcgagccgctg
gaggccattgagctggagctggatgaggaggaggatgcggcggtgtacgagtggttctat
gatgacaagccgctgcagtacaccaagtttgtcaacggggcaagctaccggcggtggcgg
ctgccgctgccggtgatgtctgcgctttaccggctgggaggccagctgctgagcgacctg
acggaccagaactacttctacctcttcaatacaaacgcgttcatcacggccaagtcgctg
aacatggccatccccggcgggcccaagtttgagccgctgttccgggacatggacacgcgc
gacgaggactggaatgagttcaacgacatcaacaagctcatcatccgctccccaatccgc
accgaatacaaggtggcgtttccgtacctgtacaacaaccggccgcgcaaggtgcggctg
agcccgtaccactaccccatggtcatgtacatcaagatggaggaccccgacctgccggcc
ttctactacgaccccctcatccaccccatcgccttctacaagtccgacgcccccaccggc
acagaggccctggacgacgatgaggaggacgcattcaccctcccagaggacgtgaacccg
ttcctggaggagacgccgctgtacacggacaacacagcgcagggcatcgcgctgctgtgg
gcgccgcaccccttcaacaagcgctcggggctcaccaggcgcgctgtggacatcccgctc
gtcaactcctggttccacgagcactgcccacagaacaacccggtgaaggtgcgcgtgagc
taccagaagctgctgaagctgtttgtgctcaacaagcttcaccaccggccgccgaagaac
atgaagaagaagagcctgttcaaggcactacgcgcgactaagttcttccagagcacggag
ctggactgggtggaggctgggctgcaggtgtgcaggcagggctacaacatgctgaacctg
ctgatccaccgcaagaacctcaactacctccacctggactacaacttcaacttgaagccc
gtgaagacgctgaccaccaaggagcgcaagaagtctcgcttcggcaacgccttccacctg
tgccgtgagatcctgcgtctcaccaagctggtcgtggatgccaatgtccagtttcggctg
ggcaatgtggacgcgttccagctggcagacggcctgcagtacaccttctcacacgtgggc
cagctgaccggcatgtaccggtacaagtacaagctcatgcgccagatccgcatgtgcaag
gacttgaagcacctggtgtactaccggttcaacacgggccccgtgggcaagggccccggc
gtgggcttctgggcgcccatgtggcgcgtgtggctcttcttcctgcgtggcatcgtgccc
ctgctggagcgctggctgggcaacctgctggcgcgccagttcgaggggcgccagtccaag
ggcgttgccaagaccgtcaccaagcagcgcatcgagtcccactttgatctggagctgcgc
gctgccgtcatgcacgacatcctggacatgatgcccgagggtgtgaagcagaacaaggcg
cgcaccatcctgcagcatctctctgaggcatggcggtgctggaaggcaaacatcccttgg
aaggtgccggggctgccggcgccgattgagaacatgattctgcgctacgtgaagcagaag
gcggactggtggaccaacgtggcgcactacaaccgcgagcgcatccgccgcggcgccacc
gtcgacaagaccgtgtgccgcaagaacctgggccgcctcacccgcctctacctcaaggcc
gagcaggagcgccagcacaactacctcaaggacggtccatatgtgacacctgaggaggca
gtggcgatctacacaacaacggtgcactggctggagtcacgcaagttcagccccatccag
ttcccgccgctgtcctacaagcacgacaccaagctgctcatcctggccctggagcgcctc
aaggagcagtacaccgtggccgtgcgcctcaaccagcagcagcgcgaggagcttgggctt
gtcgagcaggcatatgacaacccccacgaggcgctgtcccgcatcaagcggcacctgctc
acgcagcgcaccttcaaggaggtctccatcgagttcatggacctgtacagccacctgatc
ccggtgtatgagatcgagccgctggagaagatcactgactcctacctggaccagtacctg
tggtacgaggcggacaagcgccaccttttccccaactgggtcaagcccgctgactccgag
ccgccgccgctgctcgtctacaagtggtgccagggcatcaacaacctggcggacatctgg
gacaccagcaatggagagtgcgtggtcatgatgcagtccgagctggagaagatgttcgag
aaggtggacctgacgctgctgaacaggctgctgcgcctgatcctggaccacaacatcgcg
gactacatgacggccaagaacaacgtggtgattgcctacaaggacatggcgcacaccaac
gcgtacggcctcatccgcggcctccagttcgcctccttcattgtccagtactacggcctt
gtgctggacctgctcatgctggggctcacacgcgcctccgagattgctggccccccgcag
atccccaacgagttcttgacgttccgggacacccgcacggagacgcggcaccccatccgc
ctgtactcgcgctacgtgaacaagatccacatcctgttccgcttcagcgcggacgaggcg
aaggacctgatccagcgcttcctgacggagcacccggaccccaacaacgagaacatcgtg
ggctacaacaacaagaagtgctggccgcgcgatgcgcgcatgcggctcatgaagcatgac
gtcaacctgggccgcgccaccttctgggacatgaagaaccggctgccgcgctcgctgacc
acccttgactggaacaactccctcgtctccgtctactcccaggacaatcccaacctcctc
ttctccatgtccgggtttgaggttcggatcctgcccaagatccgcatggtggcggagggc
tttgccaacaaggacggcgtgtggagcctgcagaacgaggccaccaaggagcgcacggcc
caggccttcctgcgcgtcgacgatgaggccctcaagagcttcgagaaccgcatccgccag
gtcctgatgtcttcggggtcgacgacgttcacaaaggtggccaacaagtggaacacggcg
ctgattgggctgatgacgtacttccgcgaggccaccgtgcacacccaggagctgctggac
ctgctcgtcaagtgcgagaacaagatccagacccgcatcaagattgggctgaactcgaag
atgccctcgcggttcccgccggtcattttctactcgcccaaggagattggcggcctgggc
atgctatccatgggccacatcctgatcccccagtccgacctgcgctacagccagcagacc
gacctgggcatcacccacttccgggctggcatgagccacgaggaggaccagctcatcccc
aacctgtaccgctacatcatgccctgggaggccgagttcaccgacagccagcgcgtgtgg
gccgagtacgcgctcaagcgccaggaggcccaggcccagaaccgccgcctcaccctcgag
gatctggaggacagctgggaccggggcatcccgcgcatcaacacgctgttctctaaggac
cgccacactctggcgtacgacaagggctggcgcgtgcgcaccgacttcaagcagtaccag
ctgctcaagcagaaccccttctggtggacccaccagcgccacgacggcaaactctggaat
ctgaacaactacaggacagatgtcatccaggcgcttggtggtgttgagggtatcctggag
cacaccctgttcaagggcacctacttccccacctgggagggcctgttctgggagaaggcc
agcggctttgaggagagcatgaagtacaagaagctcaccaacgcgcagcgctccgggctg
aatcagatccccaaccgccgcttcacgctgtggtggtcgcccaccatcaaccgcgcgaat
gtgtatgtgggcttccaggtgcagctcgacctcaccggcatattcatgcacgggaagatc
cccacgctcaagatctccctcatccagatcttcagggcgcatctgtggcagaaggtgcac
gagtccgtcgtcatggacttgtgtcaggtgtttgaccaggagctggacgcgctggagatc
gagactgtgcagaaggagaccatccacccgcgcaagtcgtacaagatgaactcctcctgc
gcagacatcctgctcttcgccgcctacagatggcccatgtccaagcccagcttgatggcg
gacacgaacgacatgatggaccagaagcccagcaacaagtactgggtggacgtgcagctg
cgctggggcgactacgactcccacgacgttgagcgctacacgcgcgccaagttcctcgac
tacaccaccgacaacatgtccatctacccctcccccactggggtgatgattggcatcgac
ctggcgtacaacctgcacagcgcgtttgggaactggtttgagggcgtcaagccgctgatc
atccaggcgatggccaagatcatgaaggccaacccggcgctgtacgtcctgcgcgagcgc
atccgcaagggcctccagctctactcctccgagcccactgagccctatctctcctcccag
aactacggcgagctcttctccaaccagatcatctggtttgtggacgacacgaacgtgtac
cgggtgacgatccacaagacgtttgagggcaacctgaccaccaagcccatcaacggcgcc
atcttcatcttcaacccgcgcacggggcagctcttcctcaagatcatccacacctccgtc
tgggccggccagaagcgcctcggccagctcgccaagtggaagaccgccgaagaggtggct
gcgctggtgcggtcgctgccggttgaggagcagcccaagcgcatcatcgtttcgcgcaag
ggcatgctggaccccctcgaggtccacctgctcgatttccccaacatcgtcatcaccggc
tccgagctgcagctgcccttccaggccgccctcaaggtggagaagtttggggacctgatc
ctgaaggccaacgagccgcagatggtgctgttcaacatctacgacgactggctcaagacc
atctcctcctacaccgccttctcgcgcctcatcctcatcctgcgcgcgctgcacgtgaac
gtggacaaggcgcgcatgctgctgcgccccgacaagtccatcatcaccgagccccaccac
gtctggcccaccctcaccgatgagcagtggatcaaggtggagattgctctgaaggacctg
atcctggcggactacagcaagaagaacaacgtcaacgtgggcgcgctgacgcagagtgag
atccgcgacatcatcctgggcgcggagatcacgccgccctccatgcagcgccagcagatc
gccgagatcgagaagcaggccgccgccggcacccagatgaccgccgtcaccaccgagacg
cagaacgtgcacggtgacaagctgatcgtgacgtcgtcgtcgccgtacgagcagcagatg
tttgggtccaagacggactggcgcgtgcgcgccatctcggccaccaacctgcacctgcgc
gtcaaccacatctacgtgaacagcgaggacatccgcgagacgggcttcacctacgtcatg
cccaagaacgtgctcaagaagttcatctgcatcgccgacctgcgcacccagatcgccgcc
ttcatctacggcgtctccccgcctgacaacccgcaggtgaaggagatccgggcggtggtg
atggtgccgcagtacggcagccaccagcaggtgaacctgccggccgcgctgccggagcat
gactacctgcgcgacctggagcccctgggctggctccacacccagcccaacgagctcctc
cagatgtccgcccaggatgtgacgatgcacgccaagatgctggaggcgaacaagagctgg
gacggcgagcgctgcgtggtgatcacggcctccttcacgccgggctcctgctcgctgacc
gcctacaagctgacgcccggcggctatgagtggggccgcaccaacaagggcgacctggcc
aaccccgtcggctacagtcccaaccactacgagaaggtccagatgctcctctccgacagg
ttcatgggcttctacatggtgccggacgtgggcagctggaacttcaacttccagggcgtc
aagcaccagcccacgatgaagtatgggctgcgcctggccaatcccaaggagttctaccac
gagatccaccgccccaagcacttcctggacttctcaaccagtgaagacattgagccggag
gccgacagagagaatcacttcgactag
DBGET
integrated database retrieval system
