KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_28532
Entry
COCSUDRAFT_28532  CDS       T02914                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K10752  histone-binding protein RBBP4
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03082  ATP-dependent chromatin remodeling
csl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    COCSUDRAFT_28532
   03083 Polycomb repressive complex
    COCSUDRAFT_28532
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csl03036]
    COCSUDRAFT_28532
Chromosome and associated proteins [BR:csl03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     COCSUDRAFT_28532
  Histone modification proteins
   HAT complexes
    HATB complex
     COCSUDRAFT_28532
   HDAC complexes
    Sin3A-HDAC complex
     COCSUDRAFT_28532
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     COCSUDRAFT_28532
    PRC2.2
     COCSUDRAFT_28532
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     COCSUDRAFT_28532
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    COCSUDRAFT_28532
  Chromatin remodeling factors
   NuRD complex
    COCSUDRAFT_28532
   NuRF complex
    COCSUDRAFT_28532
   NuRF complex (fruit fly)
    COCSUDRAFT_28532
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML_2 WDR55 CAF1C_H4-bd WD40_WDHD1_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_HPS5 Beta-prop_WDR19_1st MIOS_WD40 EIF3I ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd PEP5_VPS11_N WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 Beta-prop_SPT8 WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 17041952
NCBI-ProteinID: XP_005648498
JGI: 28532
UniProt: I0YZY5
LinkDB
AA seq 501 aa
MVRQREKGNPDKDKYGTWKQNLPIMYDWIMNHNRGWPSQSCRWGEAIEDFKYKKRHYLYL
SDRTDPEGTDPNKLSVWTLDVTKPRVAPAESLKYDEKAKSPNIKPYSTIIHPGEVNKIRE
CPQHPHIVVTHTDAKELYVWDIEKQPNRATDKLQKLSIPDLVLVGHEQVAAFALGMSSAK
TLVASGGEDQKVRIVPNIDQGESAGPAKYSPPAPSLAPRFKLKGHSATIEDVVWRPGSTE
ELASVGDDYKLLLWDTRAQPGPAAAVEQAHGQQDVQCVDWSALQEHMLVTGAADGSVKVW
DRRQLKEAVHTFKLHDSAIMRVEWAPYKPGVFASGGEDKLIAVWDLERQDKMPGGGEEAG
PDAKKARTIGASLPPQLMFHHAGHRSQVVDFQWHPTDPYTMVSVSDAGAGGTLQVWRISD
LIWRPIDEVLRELEEHRDYILGVKEEAREAASGANTAPAADKPVRSGVTDTTVVAPAAPK
GASKEEAAARAADSADPMDES
NT seq 1506 nt   +upstreamnt  +downstreamnt
atggtgaggcaaagggagaagggcaaccccgacaaggataaatatgggacctggaagcag
aatctgcccattatgtacgactggataatgaaccacaaccgtggatggccgtctcagagc
tgcaggtggggggaggcaatcgaagacttcaagtacaagaagcggcattatctgtacctc
tcagacaggacggaccccgagggaaccgacccaaacaaactgtctgtgtggacgcttgac
gtcaccaagccgcgggttgcaccagcagagtccttgaagtatgatgagaaagccaagagc
ccaaacatcaagccatactccaccatcatccacccaggagaggtgaataagatccgtgag
tgtccgcagcacccgcacattgtggtgacgcacacggatgcaaaggagctgtatgtgtgg
gacattgagaagcagcccaaccgggccaccgacaagctgcagaagctgtctattccggac
cttgttctggtgggtcacgagcaggtggcggcctttgcgctgggcatgagctcggcaaag
acccttgtagccagcggcggcgaagatcagaaggtgcggattgtaccgaacatagaccag
ggggaaagcgcggggccggccaaatactcgccgcctgccccgtccctggcacctaggttc
aagctcaagggtcacagcgcaacgatagaggatgtggtgtggcggccgggcagcacagaa
gagctggccagcgtgggcgatgactacaagctgctgctgtgggacacgcgcgcgcagccg
gggccggctgccgctgtggaacaagcgcacggccaacaggacgtccagtgcgtggactgg
agcgcgctgcaggaacatatgctcgtcactggggctgcggacggcagcgtgaaggtgtgg
gaccggcggcagctgaaggaagcggtgcacaccttcaagctgcatgactcggccatcatg
cgagtggagtgggcaccctacaagccaggtgtgtttgcgagcgggggcgaggacaagctg
atagcagtgtgggacctggagcgccaagacaagatgcccggcggcggcgaggaggccggc
ccggatgcgaagaaggcgcgcaccatcggcgcctcgctgccgccgcagctcatgttccac
cacgcgggccaccgctcgcaggtggtggacttccagtggcacccgacggatccctacacc
atggtcagcgtgtcggacgccggagcagggggcacgctgcaggtgtggcgcatcagcgac
ctcatttggcgccccattgacgaagtcctgcgcgagcttgaggagcacagggactacatt
ctgggcgtgaaggaagaggcgagggaggctgcgagcggcgcgaacacagctcctgctgct
gataagccagtcaggagcggagtgacagacacgactgttgtggcgccggcagcgccaaag
ggcgccagcaaagaggaagctgcagccagggctgctgacagtgctgaccccatggacgag
agctga

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