Coccomyxa subellipsoidea: COCSUDRAFT_28532
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Entry
COCSUDRAFT_28532 CDS
T02914
Name
(RefSeq) WD40 repeat-like protein
KO
K10752
histone-binding protein RBBP4
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03082
ATP-dependent chromatin remodeling
csl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
COCSUDRAFT_28532
03083 Polycomb repressive complex
COCSUDRAFT_28532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_28532
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
COCSUDRAFT_28532
Histone modification proteins
HAT complexes
HATB complex
COCSUDRAFT_28532
HDAC complexes
Sin3A-HDAC complex
COCSUDRAFT_28532
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
COCSUDRAFT_28532
PRC2.2
COCSUDRAFT_28532
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
COCSUDRAFT_28532
Heterochromatin formation proteins
Other heterochromatin formation proteins
COCSUDRAFT_28532
Chromatin remodeling factors
NuRD complex
COCSUDRAFT_28532
NuRF complex
COCSUDRAFT_28532
NuRF complex (fruit fly)
COCSUDRAFT_28532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
CAF1C_H4-bd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
MIOS_WD40
EIF3I
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
17041952
NCBI-ProteinID:
XP_005648498
JGI:
28532
UniProt:
I0YZY5
LinkDB
All DBs
AA seq
501 aa
AA seq
DB search
MVRQREKGNPDKDKYGTWKQNLPIMYDWIMNHNRGWPSQSCRWGEAIEDFKYKKRHYLYL
SDRTDPEGTDPNKLSVWTLDVTKPRVAPAESLKYDEKAKSPNIKPYSTIIHPGEVNKIRE
CPQHPHIVVTHTDAKELYVWDIEKQPNRATDKLQKLSIPDLVLVGHEQVAAFALGMSSAK
TLVASGGEDQKVRIVPNIDQGESAGPAKYSPPAPSLAPRFKLKGHSATIEDVVWRPGSTE
ELASVGDDYKLLLWDTRAQPGPAAAVEQAHGQQDVQCVDWSALQEHMLVTGAADGSVKVW
DRRQLKEAVHTFKLHDSAIMRVEWAPYKPGVFASGGEDKLIAVWDLERQDKMPGGGEEAG
PDAKKARTIGASLPPQLMFHHAGHRSQVVDFQWHPTDPYTMVSVSDAGAGGTLQVWRISD
LIWRPIDEVLRELEEHRDYILGVKEEAREAASGANTAPAADKPVRSGVTDTTVVAPAAPK
GASKEEAAARAADSADPMDES
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggcaaagggagaagggcaaccccgacaaggataaatatgggacctggaagcag
aatctgcccattatgtacgactggataatgaaccacaaccgtggatggccgtctcagagc
tgcaggtggggggaggcaatcgaagacttcaagtacaagaagcggcattatctgtacctc
tcagacaggacggaccccgagggaaccgacccaaacaaactgtctgtgtggacgcttgac
gtcaccaagccgcgggttgcaccagcagagtccttgaagtatgatgagaaagccaagagc
ccaaacatcaagccatactccaccatcatccacccaggagaggtgaataagatccgtgag
tgtccgcagcacccgcacattgtggtgacgcacacggatgcaaaggagctgtatgtgtgg
gacattgagaagcagcccaaccgggccaccgacaagctgcagaagctgtctattccggac
cttgttctggtgggtcacgagcaggtggcggcctttgcgctgggcatgagctcggcaaag
acccttgtagccagcggcggcgaagatcagaaggtgcggattgtaccgaacatagaccag
ggggaaagcgcggggccggccaaatactcgccgcctgccccgtccctggcacctaggttc
aagctcaagggtcacagcgcaacgatagaggatgtggtgtggcggccgggcagcacagaa
gagctggccagcgtgggcgatgactacaagctgctgctgtgggacacgcgcgcgcagccg
gggccggctgccgctgtggaacaagcgcacggccaacaggacgtccagtgcgtggactgg
agcgcgctgcaggaacatatgctcgtcactggggctgcggacggcagcgtgaaggtgtgg
gaccggcggcagctgaaggaagcggtgcacaccttcaagctgcatgactcggccatcatg
cgagtggagtgggcaccctacaagccaggtgtgtttgcgagcgggggcgaggacaagctg
atagcagtgtgggacctggagcgccaagacaagatgcccggcggcggcgaggaggccggc
ccggatgcgaagaaggcgcgcaccatcggcgcctcgctgccgccgcagctcatgttccac
cacgcgggccaccgctcgcaggtggtggacttccagtggcacccgacggatccctacacc
atggtcagcgtgtcggacgccggagcagggggcacgctgcaggtgtggcgcatcagcgac
ctcatttggcgccccattgacgaagtcctgcgcgagcttgaggagcacagggactacatt
ctgggcgtgaaggaagaggcgagggaggctgcgagcggcgcgaacacagctcctgctgct
gataagccagtcaggagcggagtgacagacacgactgttgtggcgccggcagcgccaaag
ggcgccagcaaagaggaagctgcagccagggctgctgacagtgctgaccccatggacgag
agctga
DBGET
integrated database retrieval system