Coccomyxa subellipsoidea: COCSUDRAFT_28540
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Entry
COCSUDRAFT_28540 CDS
T02914
Name
(RefSeq) AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
COCSUDRAFT_28540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_28540
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_28540
04131 Membrane trafficking [BR:
csl04131
]
COCSUDRAFT_28540
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csl04147
]
COCSUDRAFT_28540
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
COCSUDRAFT_28540
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
COCSUDRAFT_28540
Membrane trafficking [BR:
csl04131
]
SNARE
SNARE associated proteins
Others
COCSUDRAFT_28540
Autophagy
Aggrephagy
Other aggrephagy associated proteins
COCSUDRAFT_28540
Exosome [BR:
csl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
COCSUDRAFT_28540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_33
AAA_16
AAA_2
AAA_22
AAA_5
AAA_14
CDC48_2
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
Vps4_C
AAA_7
NACHT
NB-ARC
TsaE
AAA_24
ResIII
DUF815
Zeta_toxin
Sigma54_activ_2
SLFN-g3_helicase
Zot
Motif
Other DBs
NCBI-GeneID:
17041962
NCBI-ProteinID:
XP_005648508
JGI:
28540
UniProt:
I0YZZ5
LinkDB
All DBs
AA seq
818 aa
AA seq
DB search
MAEAGPSSVPVDDIPKEKKDFSTAILERKKSPNRLIVDDAINDDNSVVALHLKTMETLQL
FRGDTVLLKGKKRKDTVCIVLADDTVEESKIRMNKTVRKNLRVRLGDIVSVHQCADVKYG
KRIHVLPIDDTIEGLTGNLFDAFLKPYFLEAYRPVRKDDVFLVRGGMRSVEFKVVETEPE
PYCIVAPDTEIYCEGEPIRREDEEKLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKT
IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE
AEKNAPSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS
IDAALRRFGRFDREIDIGVPDETGRLEVVRIHTKNMKLDDNVDLEAIAKDTHGYVGADLA
ALCTEAALQCIREKMDVIDLEDENIDAEILNAMAVSNDNFKTALGISNPSALRETVVEVP
NVNWEDIGGLENVKRELQEVVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA
NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIANQRGSSSGD
AGGAADRVLNQLLTEMDGMNSKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEGS
RRQIFKAVLRKSPVAGDVDVDLLVKYTNGFSGADITEICQRACKYAIRENIEKDIERERV
KAENPDSMEEDAPDPVPSITRAHFEEAMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEF
RFPDRPAGATTPAGEAAAAAAAPAFANGAADDDDDLYS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggccggaccatcgagcgtccctgttgacgacatcccgaaggagaaaaaggat
tttagcacagctatcctggagaggaagaagtctcctaatcgtctgattgtggatgatgct
atcaacgacgacaactcagttgtggcgttgcacttgaagacaatggagaccttgcaactt
tttagaggcgacaccgtgctcctcaagggcaagaagcgtaaggacactgtgtgcatcgtc
ttggcggatgacacagtggaagagtccaaaatccgcatgaacaagactgtgcgcaagaat
ctgcgtgtgcggttgggagacattgtgtcagtgcaccagtgtgcggacgtgaagtatggc
aagcgcatccatgtgctgcccatcgacgacaccatcgagggcctgaccggcaacctgttt
gacgccttcctgaagccctacttcctggaagcctaccgacctgtcaggaaggacgacgtg
ttccttgtacgcggaggcatgcgcagcgtggagttcaaggtggtggagacggagccggag
ccctactgcatcgtcgcccccgacaccgagatctactgcgagggcgagcccatccgccgc
gaggacgaggagaagcttgacgaagtcggatatgacgacgtgggaggtgtgcggaagcag
atggcgcagatccgcgagctggtggagctgccactgcgccacccgcagctcttcaagacc
atcggcgtcaagcctcccaagggaatcctgctctacgggccccccggctcaggcaagacg
ttgatagcgcgggcggtggcgaatgagacgggcgcattcttcttcctgatcaacggccca
gagatcatgagcaagctggccggcgagtcggagagcaacctgcgcaaggcctttgaggag
gccgagaagaacgcgccctccatcatcttcattgatgagatcgactccatcgcgcccaag
cgcgagaagacgcagggagaggtggagcggcgcattgtgtcgcagctgctgaccctcatg
gacgggctcaagtcgcgcgcgcacgtcatcgtcatgggcgccaccaaccgacccaacagc
attgacgcggcgctgcggcgttttgggcggtttgaccgcgagatcgacatcggcgtgccg
gacgagactggccggctggaggtggtacgcatccacaccaaaaacatgaagctggatgac
aacgtcgacctagaggccatcgccaaggacacgcacgggtacgtgggcgctgatctggcg
gcactgtgcacggaggcagcgctgcagtgcattcgcgagaagatggacgtgatcgacctg
gaggatgagaacatcgacgccgagatcctcaatgccatggccgtctccaacgacaatttc
aagaccgccctcggcatcagcaacccgtcggcgctgcgcgagacggtggtggaggtgccc
aacgtgaactgggaggacattggcggcctggagaacgtcaaacgcgagctgcaggaggtg
gtgcaataccccgtggagcacccggagaaattcgagaagtttggcatgtcgccctccaag
ggcgtgctcttctacggacccccaggctgtggaaaaacgctactggcaaaggccatcgcc
aacgagtgccaggccaacttcatcagtgtcaaggggcccgagctgctcaccatgtggttt
ggtgagtcggaggcgaacgtgcgcgagatttttgacaaggcgaggcagagcgcgccgtgc
gtgctgttcttcgatgagctggacagtatcgccaaccagcgcggctcgtcctcgggcgac
gccggcggcgcggccgaccgtgtgctgaaccagctgctgaccgagatggacggcatgaac
tccaagaagactgtcttcatcatcggcgccaccaacaggccggacatcattgacagcgcg
ctgctgcggccggggcggctggaccagctgatctacatcccgctgccggacgaggggtcg
cgccgccagatcttcaaggccgtcctccgcaagtccccagtcgcgggcgacgtcgacgtg
gacctgcttgtcaagtacactaacggattctccggcgccgacatcaccgagatctgccag
cgcgcctgcaagtatgcgatccgtgagaacattgagaaggacattgagcgggagcgggtg
aaggcggagaacccggacagcatggaggaggatgcgcccgacccggtgccctccatcacg
cgcgctcacttcgaggaggccatgaagtacgcgcgccgctccgtctccgacgccgacatc
cgcaagtaccaggcgtttgcgcagacgttgcagcagtcgcgcggcttcggctcggagttc
cgcttcccggacaggccagccggcgccacaacccccgccggcgaggccgctgcggccgcc
gcagccccggcttttgcaaacggcgctgctgatgacgacgatgacctctacagctag
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integrated database retrieval system
