Coccomyxa subellipsoidea: COCSUDRAFT_29598
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Entry
COCSUDRAFT_29598 CDS
T02914
Name
(RefSeq) DNA replication factor C complex subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03030
DNA replication
csl03410
Base excision repair
csl03420
Nucleotide excision repair
csl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCSUDRAFT_29598
03410 Base excision repair
COCSUDRAFT_29598
03420 Nucleotide excision repair
COCSUDRAFT_29598
03430 Mismatch repair
COCSUDRAFT_29598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csl03032
]
COCSUDRAFT_29598
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_29598
03400 DNA repair and recombination proteins [BR:
csl03400
]
COCSUDRAFT_29598
DNA replication proteins [BR:
csl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
COCSUDRAFT_29598
DNA Replication Termination Factors
ELG1-RFC complex
COCSUDRAFT_29598
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
COCSUDRAFT_29598
DNA repair and recombination proteins [BR:
csl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
COCSUDRAFT_29598
Check point factors
HRAD17(Rad24)-RFC complex
COCSUDRAFT_29598
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RuvB_N
AAA_11
ResIII
AAA_5
AAA_16
AAA_14
DUF815
DEAD
AAA_24
AAA_7
AAA_22
AAA_3
AAA_30
ATPase_2
AAA_assoc_2
AAA_18
AAA_19
nSTAND3
DUF4359
RCF1-5-like_lid
TIP49
AAA_28
AAA_25
IstB_IS21
bpMoxR
Viral_helicase1
RNA_helicase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
17040301
NCBI-ProteinID:
XP_005646859
JGI:
29598
UniProt:
I0YV96
LinkDB
All DBs
AA seq
334 aa
AA seq
DB search
MGSKGKAPSIIDDAPWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGK
TSTILAVARQMYGASLRSMVLELNASDDRGIGIVREQIVDFASTKTMFSNKFKLVILDEC
DAMTKDAQAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQ
FVIDSERVNMGDGGLDAVVTLGAGDMRRTLNILQATHMSADVVSEEAVYQCTGNPLPKDI
EAIVQALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALAD
TEHRLAFGTSERLQLGALVGAFSVAREGIVAAAK
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgaaagggaaggcgccaagcatcattgatgacgctccgtgggtggagaagtac
aggcctaagacgctcgatgatgtagcagcacacaaggaaatcatagacacaataaagcgg
ctggtcaaggaggatcggttcccacacgtgctcttctatgggccccctggaactgggaaa
acctccaccattctggcagtggcacggcagatgtatggcgcatcattgaggagtatggtg
ctggagctgaacgcctcagatgaccgtggcataggcatcgtcagggaacagattgtggat
tttgccagcacaaagaccatgttcagcaacaagttcaaacttgtgatcctggatgagtgt
gatgcgatgaccaaggatgctcaggcggcgcttagacgagtgatcgagaagtacacgcga
aacacgcggttctgcctcatctgcaactatgtcaacaagatcatcccagcgctgcagtcg
aggtgcacgcgcttccgcttcccgccgctggcagacagctatgtcaggagccgcctgcaa
tttgtcatcgacagtgagagggtaaatatgggggacggtggcctggatgctgtggtgacc
cttggggcaggggacatgaggcgaaccctcaatatcctccaggcgacgcacatgtcggcg
gatgtggtgagcgaggaggcggtgtaccagtgcacaggcaacccgctgcccaaggacatc
gaggcgatagtgcaggcgctgttcaacgaggactttgtggacgtgtttgccaaggtgcag
gacatgcagatcaacaagggcctcgctctcaccgacattgtccagcagctgcacccgtgg
gtgttccgggtgaacatgccggcgtctgtgcgcataaagctggtggatgcgctggccgac
acggagcaccggctggcctttggcaccagcgagcgcctgcagctgggcgcccttgtgggg
gcattctccgtggccagagaaggcatcgtggcagctgccaaatga
DBGET
integrated database retrieval system
