Coccomyxa subellipsoidea: COCSUDRAFT_30930
Help
Entry
COCSUDRAFT_30930 CDS
T02914
Name
(RefSeq) HUA enhancer 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_30930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_30930
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_30930
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_30930
03016 Transfer RNA biogenesis [BR:
csl03016
]
COCSUDRAFT_30930
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCSUDRAFT_30930
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
COCSUDRAFT_30930
Spliceosome [BR:
csl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
COCSUDRAFT_30930
Complex C
U4/U6.U5 tri-SnRNP related factors
COCSUDRAFT_30930
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCSUDRAFT_30930
Transfer RNA biogenesis [BR:
csl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
COCSUDRAFT_30930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
GEMI5_RBS
ATPase_2
Motif
Other DBs
NCBI-GeneID:
17037854
NCBI-ProteinID:
XP_005644424
JGI:
30930
UniProt:
I0YNB1
LinkDB
All DBs
AA seq
1020 aa
AA seq
DB search
MEETPEGMAVAAATREAAKRKREAENGLPEAKRPARPIPLISHEVAVPKGYDEAAKNLDP
ALHGTLENPRWSGPRAKEYPFVLDPFQEVSVACIERRESVLVSAHTSAGKTAVAEYAIAL
AFKNNQRVVYTSPLKALSNQKFRELSEEFEDVGLMTGDVSINPNARCIVMTTEILRSMLY
RGSEVLREVAWVVFDEVHYMQDRERGVVWEETIIFLPPETKMVFLSATLSNAAEFAAWVA
ALHKQPCHVVYTDFRPTPLQHYAYAPGAKGLFLVLDEKGNFKDENFSKLRSEVAPETAAD
DAPSTSGRGAENGGRGGRGRGRGRNSGGRSGGGRGDKGKGDTAAHIYKIVKMIKDRNFEP
VIVFSFSRRECEMYARTLMKPDAKGNAINFNSPEEQEMVGDVFAQAIQSLSEADREMPPV
VEILKLLRAGIAVHHSGLLPILKEVVELLFQEGLIKALFATETFAMGLNMPARTVVFTAM
EKWDGETNRFMSSGEYIQMSGRAGRRGKDDRGMCIMMIDDKMDAASCRGIVQGKPSPLLS
RFRLTYYTLLNILRRAEGSGQSMEYVIARSFQQFQFERSLPQVQKELREVEERAAQIGAA
TQEAMDEYQTLKAEIEGAERVLTPALLRPERCMHFLRPGRLVRVREGPYDWGWGIVVAVH
QKGRPKPKVSLLKGTSKLCAIPGQRKERATPMPEPAGRGRPGEMNVLPVPLQLLTAISTL
RISIPPDLRPIEARKATLATVRGLEQQYPNGIPELDPAEDFQVEEPEALAAAAKLGSLQA
RLRRNPVYQAERDEKKMLDVERQAVLAAQAVALRRKLTESHLAKFRTEAKNRTAVLRKLG
HVTAEGVVSLKGRAACEISTGDELLTTELMLNGVFNSLDVHQLVAVISCLVPVEKSNEEV
KLKAELAEPLAALQDTARAIAEVQRECKLEVDPDEYVESFKPFLMDVIYAWSKGEQFVDV
CGRTDIFEGSIIRATRRLDELVNELAAAASVIGDVGLEEKFRAAAATIRRDIMFAASLYI
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggaagagacacctgagggcatggctgtagcggcagcaaccagggaggctgccaaaagg
aagagggaggcagagaatgggttgccagaagccaagcggcctgcgcggcccataccactt
atctcccatgaagtggcagtgcccaagggatatgacgaagcggccaagaacctcgaccct
gccctgcatggtaccttggagaatcccaggtggagcggacccagggcaaaggagtacccc
ttcgtgctggaccccttccaagaagtctctgtcgcctgcattgagcggagggagtcagtg
ctggtgtcagcgcacacgtcagcgggaaaaacagccgttgcagagtatgcaatagctctg
gccttcaaaaacaaccagcgcgtcgtgtacacctcccccttgaaggcgctgagcaaccag
aagttccgggagctgagcgaggagtttgaggacgtggggctgatgacaggtgacgtgtcc
atcaaccccaacgcgcgctgcatcgtcatgaccaccgaaatcctgcgctccatgctctac
aggggctcagaggttctgagggaggtggcgtgggtggtcttcgacgaggtacactacatg
caggacagggagaggggcgtcgtctgggaggaaaccatcatcttcctgcccccggaaacc
aagatggttttcctgtcagcgacgctgtcaaacgcagcggagtttgcagcatgggtggct
gccctgcacaagcagccctgccatgtggtttacaccgacttccggcccacaccgctgcag
cactatgcatacgcacccggcgccaagggcctctttctggtgctggacgagaagggcaac
ttcaaggacgagaacttctcgaagctgcgctcagaggttgcgccagagaccgcggcggac
gatgcacccagcacctcagggcgaggggccgagaacggcggcaggggcggccggggccgt
ggtcgagggaggaattccggggggcgcagcggtggcggccgtggggacaagggaaaggga
gacaccgccgcacacatctacaagatcgtgaagatgatcaaggaccgcaactttgagcca
gtaatcgtcttcagcttcagcagacgggagtgcgagatgtacgcgcggacgctgatgaag
ccagacgcgaagggcaatgccataaactttaacagcccagaagagcaggagatggtgggg
gacgtctttgcacaggctatccagtctctgtcagaggcggaccgggaaatgcccccggtg
gtggaaatcctgaagcttcttagggccggaatcgcggtgcaccactccgggcttctgccc
atcctgaaggaggtggtggagctgctcttccaggaaggtctcatcaaggcgctctttgcg
acggagacatttgcgatgggcctgaacatgccggcgaggacggtggtcttcacggcgatg
gagaagtgggacggagagacgaatcggttcatgtcttcgggcgagtacatccagatgagc
ggccgcgccggccgccgcgggaaggacgaccgggggatgtgcatcatgatgatcgacgac
aagatggacgccgccagctgcagggggatcgtgcaggggaagccgtcgccgctgctgtcg
cggttccggctgacttactacacattactaaacatcctgcggcgcgcggagggcagcggg
cagagcatggagtatgtaattgcgcgctccttccagcagttccagttcgagcgttccctc
ccgcaggtgcagaaggagctgagggaagtggaggagagggcggcgcagattggcgctgcc
acacaggaggccatggacgagtaccagacactcaaagcggagatagagggtgcggagcgg
gtgctgacgccggcgctgctgcggccggagcgctgcatgcacttcctgcggccggggcgg
ctcgtgcgagttcgcgaagggccctacgactggggttggggcatcgtcgtggctgtgcac
cagaagggccgcccaaagccaaaggtaagcctgctgaaaggtacctccaagctctgcgca
attccaggccaaaggaaggagcgtgcaactcccatgccggagccggcggggcgggggcgg
ccaggggagatgaatgtactgccggtgccgctgcaattactaacggccatatccacgctg
cgcatcagcataccccccgatctgcggcccatagaagcgcgcaaggccaccctggcgacc
gtacggggtttggagcagcaatacccaaacggcatccctgagctggacccagcagaggat
ttccaggtggaggagcctgaagctctggctgctgcggccaaacttggctccctgcaagct
cgcctgcgcaggaaccccgtctaccaggcggagagggatgagaagaagatgctggatgtg
gagaggcaagcggtgctggcagcacaggcagtggcgctgcggcggaaactcacagagtcg
cacctcgccaagttcaggactgaggccaagaacaggacggcggtgctgcgaaaactgggt
catgtgacggcggagggagttgtgtctctcaaggggcgcgcggcgtgtgagatcagcacc
ggggacgagttgctaactacggagctgatgctgaacggcgtgttcaacagcctggatgtg
caccagctggtcgctgtcatctcctgcctcgttcctgtggagaaatccaacgaggaggtg
aagctgaaggctgagctggcggagccgctggccgcactgcaggacacggcgcgcgcgata
gccgaagtccagcgcgagtgcaagctcgaggtggacccggacgagtatgtggagtccttc
aagcccttcctcatggacgtcatctacgcctggtccaagggggagcaattcgtggacgtg
tgcgggcgcacggacatctttgagggcagcataatccgcgccacgcggcgacttgacgag
cttgtcaacgagctggcggccgcggcgtccgtcatcggcgacgtgggcctcgaagaaaaa
ttccgcgcggcagccgccactatccggcgcgacatcatgtttgctgcctcgctctacatc
tga
DBGET
integrated database retrieval system
