KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_3156
Entry
COCSUDRAFT_3156   CDS       T02914                                 
Name
(RefSeq) RFC1-domain-containing protein
  KO
K10754  replication factor C subunit 1
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03030  DNA replication
csl03410  Base excision repair
csl03420  Nucleotide excision repair
csl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCSUDRAFT_3156
   03410 Base excision repair
    COCSUDRAFT_3156
   03420 Nucleotide excision repair
    COCSUDRAFT_3156
   03430 Mismatch repair
    COCSUDRAFT_3156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csl03032]
    COCSUDRAFT_3156
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_3156
DNA replication proteins [BR:csl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    COCSUDRAFT_3156
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     COCSUDRAFT_3156
SSDB
Motif
Pfam: RFC1 AAA RuvB_N AAA_22 RCF1-5-like_lid Gp44_lid Rad17 nSTAND3 AAA_14 TIP49 AAA_19 DUF5580_M AAA_18 DDE_Tnp_IS66 IstB_IS21 AAA_24 AAA_assoc_2
Other DBs
NCBI-GeneID: 17037484
NCBI-ProteinID: XP_005643987
JGI: 3156
UniProt: I0YM24
LinkDB
AA seq 480 aa
LWVEKHKPQRSADLIGNPGLIGTIREWLQNWYTPAWELSCQFTCATYLTKKAIILSGPPG
IGKTSSALIIARELGFIPVEVNASDTRNKADKSAKGGMAGKLANNIKELANNRALTSGAQ
GEEKKLCLIMDEVDGMSAGDRGGVPDLILTIKAAKLPIICICNDKYNQKLKSLRNHCLEL
DFRKPTSQQISKRLIQICQKEGLQVNESTLAALVESSNADIRLMLGQLQMIRLRKRSLSY
DEAKMGGGKDADMSPFEAGRKLLSLESEKMSLNDRIDLVFQDADLVPLLVQLNCGLELQM
CSALECVQVLAKAADALSAGDLVNRKVRQYGSWGLMPFAAAIGSVYPATYMRGGRETFSS
YENNFPRFTAWLGNNSSTGKQRRLMGELHTRMTSSGHVASDRTGLRTAYLPTLRYALSKP
LASEDKEGIPVVINTMQEYCISRDELDFVMSVTHFKSKAEWSEDPMKGVDTKVKSAFTRT
NT seq 1440 nt   +upstreamnt  +downstreamnt
ctgtgggtggagaaacacaaacctcagaggtcagcggacctgatcgggaatccaggcctc
atcggcaccatcagagagtggctgcagaactggtacacacctgcatgggaactttcatgc
caatttacctgtgccacatacctgacaaagaaagccattatactcagtggtcccccaggc
atcggcaagacctcctcggcgctgatcattgccagggaactgggatttatcccggtcgag
gtgaacgccagcgacacacgcaacaaagctgacaagagtgccaagggaggtatggcaggc
aagctggccaacaatatcaaggagctggccaacaaccgcgcgctcacttcaggcgcccag
ggagaggaaaagaagctgtgcctgatcatggacgaggtggatggcatgtcagcgggtgac
aggggcggtgtccctgacctcatcctcaccatcaaggccgccaagctgcccatcatctgc
atctgcaatgacaagtacaaccagaagctcaagtccctgcgaaaccactgccttgagctg
gacttcaggaagcccacatcgcagcagatctcaaagcggctgatacagatctgccagaag
gagggtctgcaggtgaatgagagcacgctggccgctttggtcgagagttccaacgctgac
attcgcctcatgctagggcagctgcagatgatccgcttgcgcaaacgctccctctcctac
gatgaggccaagatgggaggtggcaaagacgctgacatgagcccctttgaggccggccgc
aagctgctatccctggagtccgagaagatgtcgctgaacgacaggatcgatctggtcttc
caggatgcagacctggtgcccctcttggtgcagttgaattgtggcttagaattgcagatg
tgttcagctctcgagtgcgtgcaggtcctggccaaggccgcggatgctctgtcggctggg
gacctcgtgaatcgcaaggtgcggcagtacggcagctgggggctgatgccctttgcggcc
gccatcggcagcgtctaccctgctacctacatgcgcggcggccgcgaaacgttcagctcc
tacgagaacaacttccccaggttcacagcatggctgggcaacaactcgtcaacgggcaag
caacggcggctgatgggcgagctacacacccgcatgacgagctctgggcatgtggcttca
gatcgcacaggcttgcgcacagcatacctgcccacgctgcgctatgcactgtccaagccg
ctggcctctgaggacaaggagggcattcccgttgttatcaacacaatgcaggagtactgc
atctcgcgggatgagttggactttgtgatgagcgtcacgcacttcaagagcaaggcggag
tggagcgaggacccgatgaagggggtggataccaaggtcaagtcggccttcacacgcacc

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