Coccomyxa subellipsoidea: COCSUDRAFT_35398
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Entry
COCSUDRAFT_35398 CDS
T02914
Name
(RefSeq) putative replication factor C 37 kDa subunit
KO
K10755
replication factor C subunit 2/4
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03030
DNA replication
csl03410
Base excision repair
csl03420
Nucleotide excision repair
csl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCSUDRAFT_35398
03410 Base excision repair
COCSUDRAFT_35398
03420 Nucleotide excision repair
COCSUDRAFT_35398
03430 Mismatch repair
COCSUDRAFT_35398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csl03032
]
COCSUDRAFT_35398
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_35398
03400 DNA repair and recombination proteins [BR:
csl03400
]
COCSUDRAFT_35398
DNA replication proteins [BR:
csl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
COCSUDRAFT_35398
DNA Replication Termination Factors
ELG1-RFC complex
COCSUDRAFT_35398
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
COCSUDRAFT_35398
DNA repair and recombination proteins [BR:
csl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
COCSUDRAFT_35398
Check point factors
HRAD17(Rad24)-RFC complex
COCSUDRAFT_35398
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_lid_RFC1
AAA_16
AAA_11
Mg_chelatase
AAA_assoc_2
SLFN-g3_helicase
AAA_30
AAA_5
AAA_28
ResIII
Gp44_lid
AAA_24
AAA_14
DNAX_ATPase_lid
bpMoxR
PhoH
nSTAND3
AAA_3
AAA_7
DUF815
AAA_18
RNA_helicase
TIP49
AAA_2
ATPase_2
Motif
Other DBs
NCBI-GeneID:
17043792
NCBI-ProteinID:
XP_005650332
JGI:
35398
UniProt:
I0Z569
LinkDB
All DBs
AA seq
329 aa
AA seq
DB search
MAHLAQPWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMA
RQLYGPELAKARVKELNASDERGINVVREKIKSFAATSVGQPVPGYPCPPFKLLILDEAD
AMTQDAQNALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISH
ICNEEGVQLQEGAMETLGKVSGGDLRKAITTLQSAVRLKGLQVEPQTLLDVSGAVPESVT
QSLLQACRTRTVSSVQAAITDAIADGWGAQQLLLEFQAGLLKDQTLKDPQRARICTVLAE
ADKCLVDGADEFLQLLHVASVAQQAICAA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatttagctcaaccgtgggtggataaatatcgaccaaaaagcgtgaatgaggtg
gcacatcaagaagaagtagtacatactcttcaaaaggcgcttgaatcagcaaatttgccc
cacctgcttttctatgggccgccagggactggcaaaacttccacagctctggctatggcc
aggcaactctatgggccagaattagccaaggcaagggtgaaggagctgaatgccagtgac
gagcgaggcatcaatgtggtgcgggagaagatcaaatcatttgcagcaacgtcggtgggg
cagcctgtccctggctacccctgcccacccttcaaactgctcatcctggacgaggctgat
gccatgacacaggatgctcaaaacgcgctgaggcggacgatggaggcgcacagcaaggtg
acgcgcttcatcttcatctgtaactacgtctcgcgcatcattgagccgctcgcgtcccga
tgcgccaagttccggtttcggccgctgcacggtggcatcatgtccgcgcgcatctcccac
atctgcaatgaggagggagtgcagctgcaggagggagccatggagacgctggggaaggtg
tcaggcggcgacctgcggaaggccatcaccaccctgcagtcagccgtgcgcctgaagggg
ttgcaggtggagccgcagactctgctggacgtgtcgggtgcggtgccggagtctgtgacg
cagtcgctgctgcaggcatgcaggaccaggacggtgtccagcgtgcaagcagccatcacc
gacgccattgccgacggctggggggcacaacagctgctgctggagttccaggcgggtctg
ttgaaggaccagacgctgaaagatccacaaagagcgcggatctgcacagtgctggcagag
gcggacaagtgcctggtggatggggcggacgagttcctgcagctcctgcacgtggcctct
gtcgcccagcaggccatctgcgcggcttga
DBGET
integrated database retrieval system
