Coccomyxa subellipsoidea: COCSUDRAFT_38998
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Entry
COCSUDRAFT_38998 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K14306
nuclear pore complex protein Nup62
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCSUDRAFT_38998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_38998
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
COCSUDRAFT_38998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
CTD
Fez1
APG6_N
Motif
Other DBs
NCBI-GeneID:
17045293
NCBI-ProteinID:
XP_005651822
JGI:
38998
UniProt:
I0Z9F9
LinkDB
All DBs
AA seq
647 aa
AA seq
DB search
MAFGGGGGFNFGGSSTPAFGASSTPAFGSSASTPAFGSGGFGAAASTPAFGAAASTPAFG
TSTGFTGFGGSGGAFGASSAPAFGASSAPFGAASTPAFGAPASTPGFGAASAPAFGTPST
PAFGASAPGFGGFGSAASSASAFGTPTSTPAFGGGFGASTPAFGAPTSSAASAPSFGGFG
ASTAAFGAGSAPAFGASPATPGFGGLFASSAPSGGLFGTTQTSLAPVNTSSAPSFDAPAS
QPALGGLSFGSTPAPAASPAPAPAPAPPASTGGGFGGFSFGPSSAAASAAASAPAPSFGA
PAASAPAAATPSFGGFGGTSGGFSLSNPAPASSAAAPSFGLGGTSLGASSSPAPFSFTLA
SGSAATPASGAAPAAPPVSGALPAASSAPAVAASSTPAPLSFGFGSAAASAPPSSLTVAI
PSSAAPAASAPPAAAPASAPAATTALVPQIPSEIKGKTVEDIISQWDMELEKRSRAFMGH
AIALADWDRAILANRHSLLTVEEQLRKAAAGQEALEKKVGMLETHQKEIHDALLSMENEA
ARLYQEEKGMADDEARQRDALYERAERLASTLAAIGDSLRDAVADVNAGKCCRYTGAAAS
MGDTSTPLGKAVRILNNQLQALTAIDERTDALETRLDKLSAPANGMA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcttttggtggaggaggaggcttcaattttggaggctcgtcaactcccgcatttggc
gcgtcttcgacgcctgcatttggcagctcagcatccacacctgctttcggctctggaggc
tttggtgcagcagcatcgacgccagcgtttggggcagcggcatccaccccagcctttggg
acgtccactggcttcacaggctttggcggcagcggcggggcctttggggcctcttccgct
cctgcctttggagcatcttccgccccttttggcgcagcatcaacccctgcctttggtgcc
cccgcatcgacccccggcttcggcgccgcatccgcgccggcttttggcaccccgtcaacg
cccgcctttggcgcatcagctccaggatttggaggcttcggaagcgcggcgtcttctgcg
tcagcattcgggacgcccacctccacgccggcgtttgggggcggctttggggcgtccacc
ccggcctttggggcgcccacctctagcgcggcgtccgcgccgtcgttcggcggcttcggt
gcgtccacggccgcgttcggcgcaggatccgcgccagcctttggtgcgtccccggcgacg
ccaggtttcggcggtttgtttgccagctcagccccgtcaggaggcctctttgggaccaca
cagacctccttggcccctgtcaacacatcttcagctcccagttttgatgcaccagcttcc
cagccggcactgggcggcttgtcatttgggtcaaccccagcgccggcggcctcgcccgca
ccggcccccgcaccggcgccccctgcttccacgggcggcggctttggtgggttctccttt
gggccttcgagcgcggctgcgtcggctgccgccagcgccccggcgcccagctttggcgcg
cctgctgcaagcgcccccgctgcggccacgccctccttcggtgggtttggaggtaccagt
ggcggcttctctctgagcaacccagcaccggcgagctctgctgccgcgcccagcttcggc
ctgggcggcacctcactgggcgcgtcctcctcgcccgcgccattttctttcacactcgcc
tcgggctccgctgcgactcctgcctccggcgctgcgcccgctgctccacctgtgtcaggt
gccctgcctgcggccagctcagccccagcagtggcagccagctctactccggcgccgcta
tcctttgggtttggcagcgctgctgcttccgctccaccctcctccctcacagtcgccatc
ccttccagcgcagcacccgccgcaagcgcccctccggccgctgcgccggcctctgcgccc
gctgccaccacggcgctggtcccacagatcccctctgagatcaagggcaagacggtggag
gacataataagccagtgggacatggagctggagaagcggtcgcgcgctttcatgggccac
gccatcgcgctggccgactgggaccgcgccatcctcgccaaccgccactccctgctcacc
gtcgaggagcagctgcgcaaggcggctgctgggcaggaggcgctggagaagaaggtgggc
atgctggagacgcaccagaaggagatccacgacgcgctgctgtccatggagaacgaggcc
gcccgcctctaccaggaggagaagggcatggcggacgatgaggcgaggcagcgcgacgcc
ctgtacgagcgcgcagaacgccttgcctccactctggccgccatcggcgactccctgcgc
gatgcggtcgccgatgtcaacgcaggcaagtgttgtcgatatacaggagctgctgcgtcc
atgggcgacacatcgacgccgctcggaaaagctgtgcgcatcctgaacaatcagctgcag
gcgctgacggccatcgatgagcgcactgatgccctcgagacccgcctggataagctctct
gctcctgccaatggcatggcttga
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integrated database retrieval system