Coccomyxa subellipsoidea: COCSUDRAFT_41451
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Entry
COCSUDRAFT_41451 CDS
T02914
Name
(RefSeq) NUC173-domain-containing protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_41451
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
90S particles
Other 90S particles
COCSUDRAFT_41451
Pre-60S particles
Other pre-60S particles
COCSUDRAFT_41451
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP12_HEAT
MMS19_C
Motif
Other DBs
NCBI-GeneID:
17042161
NCBI-ProteinID:
XP_005648707
JGI:
41451
UniProt:
I0Z0J4
LinkDB
All DBs
AA seq
1322 aa
AA seq
DB search
MSGEGKPNVAVGLVQVCAAMGTILSVTLSRVPNAVLRSKFAASSEILCSLVEEHAEQAAT
LKPVLSCLAMVTAAVDPREWASAARPFGLLLGLSLDERPKVRKRAQEGVIGVLAAVRGTS
AADAAGSTVARVCQQVLPGPEVAARAAAAASNKKRAEAEAAIAKAVTDALRILGLLKPAL
PLMPGTRVQEVVGLMLKLYVLRQPMLLRSATECLAALCAGSSSISAAALVEVLRNVVHME
TAWDSKDADSLISLINLVESGYIRLHELDATAAAERLPHAFHAVIPRLTGDLEGVRRRAE
EALNRLIAACLDDAAVAAAVNLAGAGMGASAGPPSAAAGVVASVAGALDPRTQDAWPSAL
SVSAALFERLGQRGARLAEPLLERVGDLCAAAAEAAEEADDEDDEERTAGAEYAGAAGAA
MSSALRNLGPEAVLQVLPLNLEEGMNGIGEARTWLLPMLHQHVSNARLAFWGGTLLPLAR
RMGSIAKDPANPHALACRALEAQLWQALPAFASWPEDTASAFRDHAKEIAMAFISRADLH
TPICTALYRLCTQNRDVLKASGQVEGLGYAGGPSATSNGDESDAEDEGQGVASEAPPSYT
PALAQQNVTVLRGFSKNWLKVMADAFCATQPGLRGPTGRAISAYAAISDPAVLTPFLKDA
LSKYVELTQAAQADVPSAALVAQGGNNTLSEQRCTFLELALALAVGLNTDCIKLLFTTAK
GAMQERDQAVQKRAYKLLAFITAKRRDFTLPALREVLETLLAGVTSSLSAAKRYRLACLQ
AAVLLLLAPDAPDVDLRGEDDAGMSAEEQRKQVVATLVSEIVLCVKEVNQKTRAAAYGLL
VDLGQAMHEADPPSLPSLDTHMGGLDLQGGSEGGSGGGGLATLFEMVLGGLVGTSPHMIS
ASVMALARLLHQFAPQLGGVAPTLLPAVLMLLRTKSREVVKAVLGFVKVCAVRLPVEVLE
QHMAQILEGLLLWSEDSKNKFRLKVRVIVERLARRCGYDAVAGAMPAGDKRLLIHIRREN
LRKQRLRSSEAGSQMDVDEEEDGRSRAKVAPTARGSTWNHTKVFSEGGSEGAPTRYSGPA
PGQRGQQRPGRSVKQGESRAVMASSANGDPLDLLDVGATRQMQRASLGAKPRRSADDYAR
GSDGRMIIQDEDAPPGVKRKRRAGGGFDDRLSDDSDFDDLRHIGGLAAGMRSASAKSVAL
AQTVATNAKTARTSRAGANSARSIGGRTSVGGRSKTTVKGRQHTGDRHAHHSWTMFKSKG
KAGGDQKGSSKVEPYAYWPLDRKMLNRRPSKKADAREGLDQVVKAARAGAAKGSKAKRHR
AQ
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagaagggaagccgaatgttgctgtggggctggtgcaggtttgtgcagccatg
gggacaatcctctcagtgactctgagcagggtcccgaatgctgtgctgcgctccaagttt
gccgcatcatccgagatcttgtgttccctcgtcgaggagcatgccgagcaggctgcgacg
ctgaagccagtgctctcctgtctggcaatggtgacagctgcagtggatccgcgtgagtgg
gccagtgctgctcggccctttggcctgctgctaggtctctccctggacgagcggccaaaa
gtgcggaagcgcgcccaagaaggtgtcattggcgtgctggctgctgtgcgtggcacatct
gcagcagatgcagctggctccaccgtcgcaagagtgtgccagcaagtgcttccgggccca
gaggtggcagcccgagcagcagcagcggcttcaaacaagaaaagggcggaggcagaggca
gccatcgccaaggcagtgacagacgccttgagaatcttgggcttgctcaagcctgcctta
cccctcatgccagggacaagagtgcaggaagtggtggggctgatgctgaagctgtacgtg
ctgcgtcagccgatgctgttacgctctgcaacagagtgcctggctgccttgtgtgccggt
tcaagcagcatcagcgcggccgctctggtggaggtgctcagaaacgtggtgcacatggag
accgcatgggattccaaggacgctgactccctcatctcattgatcaacctggtggagtcc
ggctacatccggctgcatgaacttgatgcgacagctgctgcggagcgcttgccgcacgca
tttcatgcagtcataccgcggctgactggtgacttggagggcgtgcggcgaagagcggaa
gaggccctcaatcgcctcattgccgcctgcctggacgatgcggctgtggccgctgcggtg
aacctggccggcgccggcatgggcgcatcggccgggccgccgtccgccgcggccggcgtg
gtggcctccgtagctggagctctcgacccgcgcactcaggacgcctggcccagcgccctg
tcagtgtctgcggcgctttttgagcgactcggccagcgaggggcgcgccttgcggagccc
ctgctggagagggtgggagacctttgcgcggctgcggctgaagcagcagaggaggctgat
gatgaagatgatgaggagcggacggccggtgcggagtatgccggagcagctggtgcggcg
atgagctcggcgttgcggaacctggggcccgaggctgtgctgcaagtgctgccgctcaac
ctagaagaggggatgaatgggataggggaggcgcggacgtggctgctgccaatgctgcac
cagcatgtgtccaacgcgcggctggccttctggggtggcacgctgctgccgctggctcgc
aggatgggctccattgccaaggaccctgccaacccccatgcactggcgtgccgtgctctg
gaggcccagctctggcaggccctgcctgcctttgcctcctggcctgaagacaccgcctct
gccttccgggatcatgcgaaggagatagccatggctttcatcagtcgtgcggatctgcat
actccaatttgcacagccctatatcgcctgtgcacgcagaaccgggatgtgctgaaggca
tcaggccaggtagagggccttggctatgcaggagggccgagtgctacctcgaatggagac
gagtctgatgcagaagacgagggccagggtgttgcatcagaagcacctcctagctacaca
cctgcactggcacaacagaatgtgacggtcctgcgtgggttctccaagaactggctcaaa
gtgatggcagatgcattctgtgctacgcaaccggggctcagaggacccactggacgcgcc
atatcagcatatgccgccatcagtgaccctgcagtcttgacacccttcctgaaggatgca
ttgagcaaatatgtggagctgacacaggcagctcaggcggacgtgccttcggctgcgttg
gtggcacaagggggcaacaacacgctgagcgagcagcggtgcaccttcctagagctggcg
cttgcgctggccgttggcctgaacactgactgcatcaagctgctcttcacgacagcaaag
ggcgccatgcaggagcgggatcaagcggtgcagaagcgcgcgtacaagctgctggcgttc
ataacggccaagcggcgagatttcacgctgccggccctgcgcgaggtgctggaaactttg
ctggcgggcgtgacatcatcgctgtcagccgccaagcgctaccggctggcgtgcctgcag
gccgccgtgctgctgctgctggcaccggacgcccccgacgttgacctgcgcggcgaggac
gacgccggcatgagtgcggaggagcagcgcaagcaggtggtggcgacgttggtgagcgag
atagtgctgtgcgtgaaggaggtgaaccagaagacgcgcgcggccgcgtacgggctgctg
gtcgaccttgggcaggccatgcacgaggccgaccccccctccctgcccagcctggacacc
catatgggcggcctcgacctccaaggtggtagcgaggggggatcgggcgggggaggcctg
gcgacgctgtttgagatggtgctggggggcctggtgggcacctcgccccacatgatcagc
gcgagtgtgatggctctcgcgcggctgctgcaccagtttgcgccgcagctgggcggggtc
gcaccaacgctgctgcccgccgtactcatgctgctgcgcaccaagagccgtgaggttgtc
aaggccgtgctcggctttgtcaaggtgtgcgcggtgcggctgccggtggaggttctggag
cagcacatggcgcagatcctggaggggctgctgctgtggagcgaggactccaagaacaaa
ttccgcctcaaggtgcgagtgattgtggagcggctggcgcggcggtgcggctacgacgct
gtggcgggcgccatgccggcgggcgacaagcggctgctcatccacatccggcgtgagaac
ctgcgcaagcagcgcctgcgatccagcgaagccggctcccagatggatgtggacgaagag
gaggatgggcgctcgagggcgaaggttgcgcccacggcgcgcggcagcacatggaaccac
acgaaagtgttctctgagggcggctccgagggagcccccaccaggtacagcggccctgca
ccaggacagcgcggccagcagcggcccgggcggagcgtcaagcagggtgagtcacgggcg
gtgatggcgagctcggcgaatggtgatccgctggacctgctggacgtgggggccacccgg
cagatgcagcgcgcgtcgttaggcgccaagccgcggcggtcggcggacgactacgcgcgc
ggcagcgacgggcgcatgattatccaggacgaggacgcaccgccaggtgtcaagcgcaag
cggagggcgggtggaggctttgatgaccggctgagcgatgacagcgactttgacgacctt
cgccacatcggcggcttggccgctggcatgcgcagcgccagcgccaaatcagtggctctg
gcgcaaactgtggcaacgaatgccaagaccgcgcgcacgtcccgggccggtgccaatagt
gctcgcagcattgggggccgaacaagcgtcggcggccgcagtaaaaccactgtgaagggc
cgacagcacaccggcgacaggcatgcacaccactcctggaccatgttcaagagcaaaggg
aaggcaggcggtgatcagaaggggagcagcaaggtggagccgtatgcgtactggcccctt
gaccgcaagatgctcaacaggcgtccatccaagaaggcagatgctcgtgaaggccttgat
caggttgtcaaggctgccagggcaggtgcagcaaaagggagcaaggccaagaggcaccgt
gcccagtga
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