Coccomyxa subellipsoidea: COCSUDRAFT_46779
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Entry
COCSUDRAFT_46779 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
COCSUDRAFT_46779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csl03021
]
COCSUDRAFT_46779
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_46779
Transcription machinery [BR:
csl03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
COCSUDRAFT_46779
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
COCSUDRAFT_46779
RSF complex
COCSUDRAFT_46779
WICH complex
COCSUDRAFT_46779
B-WICH complex
COCSUDRAFT_46779
NORC complex
COCSUDRAFT_46779
BRF complex
COCSUDRAFT_46779
NuRF complex (fruit fly)
COCSUDRAFT_46779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
HAND
AAA_14
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
17043594
NCBI-ProteinID:
XP_005650136
JGI:
46779
UniProt:
I0Z4M3
LinkDB
All DBs
AA seq
1022 aa
AA seq
DB search
MSGSEEFEGSVPPLGDDIPEEDWDAANADGATGTEEDDGDLESYDTEDEDPLPDDDLGET
DAEKAEIARKERERLRSQAKHKKDQLEKVRDLQNQDTAIGEGRGRHGAKYTEEMEDADLL
KDEVGGSEHVAHRLMQQPSVIKHGIMREYQMQGLNWLIHLYDNGINGILADEMGLGKTLQ
TISLLGYLQEYRGIHGPHMVIVPKSTLHNWINEFRKWCPSIRAVKFHGNQEERAYQREQT
VAVGKFDVVVTSYEMVIKEKNHFKKFHWRYIIIDEAHRIKNENSILSRVVRTFKTNYRLL
ITGTPLQNNLHELWALLNFLLPEVFSSAEKFDEWFNVQDKDSEAEVVSQLHKVLRPFLLR
RLKSDVEKGLPPKKETILKIGMSEMQKKFYAALLQKDIDAINGGADRSRLLNIVMQLRKC
CNHPYLFQGAEPGPPYTTGEHLVENSGKLVLLDKLLPKLQSRDSRVLIFSQMTRLLDILE
DYCLYRGYKYCRIDGNTSGEDRESQIDGFNAEGSEKFIFLLSTRAGGLGINLYTADIVVL
FDSDWNPQMDLQAMDRAHRIGQKKEVQVFRFCVENSIEEKVIEKAYKKLRLDALVIQQGR
LTENTKTVNKDDLLSMVRYGAEMVFSSEAANITDQDIDAIIQKGMRATNELNEKMKQYTE
NAKAFTLDGGFNAYEYKDEDDVPEELPNFKQLAGSNWIDPPKRERKRVDFQFFNVPRLTE
IFDKEQAYELFKHAQSQKETAARAQGASEDVVQAQIAPAPDDPQPLGEEEIEEKEQLLSE
GFSNWNRRDFNAFVRACEKYGRNSLAEITREVDGKTEEEVSTYSKTFWKRYKELSDWERV
IKNIERGEQRIQRQQDIMTAIAAKMERYKNPWQELKLQYGANKGKAYTEEEDRFILCMVH
KLGYGAWDELKAEIRRSWRFRFDWFFKSRMPQELARRCDTLIRLVEKENEENEAAEREER
KKTGGPGRKSAASRAATDVSGSAPVRKRRASGAAGGPATKKRSAAGGVSAAATPTPPPGG
DE
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgtctggctctgaggagttcgagggcagtgtgccacctctgggcgacgatattcccgaa
gaggactgggatgcagcaaatgcggatggagcgacaggaacggaagaagatgatggggat
ctcgagagttatgacaccgaagacgaggatcctcttccagatgatgatctgggtgagacg
gatgccgagaaagcagagatagcacgcaaagaacgtgagcgcctgcgctcgcaagcgaag
cataagaaggatcagctcgagaaggtcagggatctgcagaatcaggacacagccatcgga
gaggggaggggcaggcatggcgccaagtacacagaggagatggaggatgcagatctgctc
aaggatgaggtgggtggcagcgaacatgtggcccaccgcctcatgcagcagcccagcgtc
atcaagcacggcatcatgcgcgagtaccagatgcagggcctcaactggctcatccacctg
tacgacaacggcatcaacggcatcctggccgacgaaatggggctgggcaagacgctgcag
accatctcgctgctgggatacctgcaagagtaccgcggcatccacgggcctcacatggtg
atcgtgcccaagtccacgctgcacaactggatcaacgagttccgcaagtggtgcccctcc
atccgcgccgtcaagttccatggcaaccaggaggagagggcgtaccagagggagcagact
gttgcagtgggcaagtttgatgtggtggtgaccagctacgagatggtgatcaaggagaag
aaccacttcaagaagttccactggcgctacatcatcattgatgaggcccaccgcatcaag
aacgagaactccatcctatcccgggtggtgaggacgttcaagacgaactacaggctgctc
atcacagggacgcctctgcagaacaacctgcacgagctatgggcgctgctcaacttcctg
ctgccggaggtgttctccagcgctgagaagttcgacgagtggttcaacgttcaggacaag
gactccgaggccgaggtggtcagccagctgcacaaggtgctgcggcccttcctgctgcgg
cggctgaagagtgatgtggagaagggcctgccgcccaagaaggagaccatcctcaagatt
ggcatgagcgagatgcagaagaagttctacgctgcactcctgcagaaggacattgacgcc
atcaacggaggcgcggacaggtctcggctgctcaacatcgtgatgcagctgcgcaagtgc
tgcaatcacccctacctgttccagggtgccgaaccagggccgccctacacaacgggcgag
caccttgtcgaaaactcagggaagctggtgctgctggacaagctgctgccgaagctgcag
tcgcgcgactcgcgtgtgctgatcttcagccagatgacgcgtctgctggacatcctggag
gactactgcctctaccgcggctacaagtactgccgcatcgatggtaacacctctggagag
gaccgcgagtcgcagatcgatggcttcaacgcagagggcagcgagaagttcatcttcctg
ctgtccacgcgtgccggaggcctcggcatcaacctctacaccgcagacattgtggtgctg
ttcgactcggactggaacccgcagatggatctgcaggccatggaccgcgcgcatcgcatc
gggcagaagaaggaggtgcaggtgttccggttctgcgtggagaacagcatcgaggagaag
gtgatcgagaaggcctacaaaaagctgcgcctggacgcgctggtcatccagcaggggcgc
ctcaccgagaacaccaagactgtcaacaaggatgacctcctctccatggtccgctacggc
gctgaaatggtcttctcctccgaggcggccaacatcacggaccaggacatcgacgccatc
atccagaagggtatgcgcgctacgaatgagctgaacgagaagatgaagcagtacacggaa
aacgcaaaggccttcacgctggacggcggcttcaacgcctacgagtacaaggacgaggat
gacgtccctgaagagctccccaacttcaagcagcttgccggctccaactggatcgacccg
cccaagcgcgagcgcaagcgcgtggacttccagttcttcaacgtgccgcgtctgacagag
atctttgacaaggagcaggcatacgagctgttcaagcacgcgcagtcccagaaggagacc
gctgctcgagcgcagggagcgtcggaagatgtggtgcaggcgcagatagcgcccgcgccg
gacgatccgcagccgctgggcgaggaggagatcgaggagaaggagcagctgctgtccgag
ggcttctccaactggaaccgccgcgacttcaacgcctttgtgcgcgcctgcgagaagtac
gggcggaattcgctggcggagatcacgcgggaggtggacggcaagaccgaggaggaggtc
agcacctacagcaagaccttctggaagcgctacaaggagctgtccgactgggagcgtgtc
atcaagaacatcgagcgtggagagcagcgcatccagaggcagcaggacatcatgacggcc
atcgcggccaagatggagcgctacaagaacccctggcaggagctcaagctgcagtacggc
gccaacaagggcaaggcctacacagaggaggaggaccgcttcatcctgtgcatggtgcac
aagctgggctatggcgcctgggacgagctcaaggctgagatcaggcgctcctggcgattc
cgcttcgactggttcttcaagtcccgcatgccccaggagctggcgcggcggtgcgacacg
ctgatccgtctggtggaaaaggagaatgaggagaacgaggcggccgagcgcgaggagcgc
aagaagacaggcggccccggccgcaagagcgctgcgtcgcgcgctgccaccgacgtctcc
ggcagcgcccccgtgcgcaagcgccgcgcctcaggcgccgccggaggccccgccaccaag
aaacgctcggctgccgggggcgtctctgcggccgccacacccactccgccccctggggga
gacgagtag
DBGET
integrated database retrieval system
