Coccomyxa subellipsoidea: COCSUDRAFT_47181
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Entry
COCSUDRAFT_47181 CDS
T02914
Name
(RefSeq) Clp1-domain-containing protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSUDRAFT_47181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_47181
Enzymes [BR:
csl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
COCSUDRAFT_47181
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
COCSUDRAFT_47181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CRAL_TRIO
Clp1
CRAL_TRIO_2
CLP1_N
CRAL_TRIO_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
17042195
NCBI-ProteinID:
XP_005648741
JGI:
47181
UniProt:
I0Z0M8
LinkDB
All DBs
AA seq
599 aa
AA seq
DB search
MNSALRSKKLKYFVLRYESDETPMVSYLNVHDGLEQRRRAAKEASTSNVSGPRTIIVGPT
DAGKSSLGKILLNYAVRAGWVPTAVDLDVGQGSITVPGCIAATPVEALIDVEEGLPTEVP
LVYFYGHQNPTENPELYKFLVERLADVLSRRANVDVQAAGVMINTMGWIEGLGYELLLHS
IEALKADVILVVGQERLYNQLRNHLRARPEVSVVRLHSSGGVVTRTPQVRKQSRTRRTKE
YFYGVRGDLSPHSQTASFEELRIFRIGGGPRAPSSALPLGATSVADPLRVTAVTAVNAEL
QNSLVAVSHANTPDQLLSVSVAGFLYISNVDIHQRTITYLAPCPGPLPGKYLLTGNLKAN
PSLEEWCKDTTLRRYLAARNGNIANAAKMLQNTLEWRRSYRPHEITWESIADEATGKQVI
APCTDKGGRTVVIMRPREERSKDTEAQIRFLVYTLEIASKIADASGQGKITWLIDFKGYS
MRNAPSIRVSLTTLSILQNHYPERLGLALCYLPPRLFSMSWKALHPFIDTVTAEKVVFVS
SQNEAAVMAQKFDMDQMEACLGGKGSWTYDKQEYSKFCRQQEPRSTADLLQPLDDRPTA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaactccgcattgaggtcaaagaagctaaagtacttcgtcttaaggtatgagtctgat
gagacaccaatggtcagctacttaaatgtccatgatgggctggagcagcgaaggcgagca
gcaaaggaagccagcacatcaaatgtgtcagggcccaggacgattattgtcgggcccaca
gatgctggcaagagcagcctgggaaagatcctgctcaactatgctgtcagggcaggatgg
gttcccacagcagtggatctggatgtaggacagggcagcataacagtcccgggctgcatt
gctgccactccagtggaggccctcattgatgtggaggaggggttgcccaccgaggttcct
ctggtgtatttctacggccaccagaaccccacagagaaccctgagctgtacaaatttctt
gtggagcgcctagcagacgtgctcagccggcgggcgaatgtggatgtgcaagcggctgga
gtgatgatcaacacaatgggctggattgaggggctgggctatgagctgctgctgcactcc
attgaggcgctcaaagcagacgtgatccttgtggtgggccaggaacgcctgtacaaccag
ctcagaaatcacctgcgggctcggccggaggtgtcggtggtgcgcctgcacagcagcggg
ggggtggtgacgcggacgccgcaggtgcgcaagcagtcgcgcacgcgccgcacgaaggag
tacttttacggcgtccgcggagacctcagcccccactcccagaccgcctccttcgaggag
ctgcgcattttccgcattgggggcggcccacgagcgcccagctccgccctgcctctgggt
gccacatcagttgcagaccctctgcgcgtcacagcagtgactgcagtgaatgcggagctg
cagaactctctggtcgcagtgtcccatgccaacaccccggaccagctgctgtctgtcagc
gttgcgggttttctctacatcagcaatgttgacatccaccaacgcaccatcacctacctg
gctccttgccctgggccattgccgggcaaatacctgctgactggcaacttgaaagccaat
ccatccctggaggaatggtgcaaggacacaacattgcgacgataccttgcagcacgcaat
gggaatatcgcaaatgccgcaaagatgctccagaataccttggaatggcgccggagttac
aggccccatgaaattacttgggagagcattgcagatgaggcaactgggaagcaagtgatc
gcaccttgcactgacaaaggtggccgcacagtggtcatcatgcggccaagggaggaaagg
agcaaagatacggaggcacagatcaggttcctggtgtatactttggagatcgccagcaag
atcgcagacgcctctggtcagggaaagataacgtggctcatagacttcaaggggtacagc
atgcgcaatgcgccctccataagggtgagcctcacgacactgtcaatactgcagaatcac
taccctgagcgccttggcctggcgctctgctatctgccaccacggctgttcagcatgtca
tggaaggccttgcaccccttcatagacacagtgacagcggagaaggtggtttttgtcagc
agccagaacgaggcggcagtgatggcacagaagtttgacatggaccagatggaggcatgc
ctgggcggcaaaggatcctggacctatgacaagcaggagtacagcaagttctgccgacag
caggagcccagatccactgccgatttgttgcaacctttggacgaccgtccaacagcatga
DBGET
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