Coccomyxa subellipsoidea: COCSUDRAFT_47678
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Entry
COCSUDRAFT_47678 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K11292
transcription elongation factor SPT6
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csl03021
]
COCSUDRAFT_47678
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_47678
Transcription machinery [BR:
csl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
COCSUDRAFT_47678
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
COCSUDRAFT_47678
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
Tex_central_region
Spt6_S1
HTH_44
HHH_3
SH2
HHH_9
Tex_N
Motif
Other DBs
NCBI-GeneID:
17040735
NCBI-ProteinID:
XP_005647292
JGI:
47678
UniProt:
I0YWH9
LinkDB
All DBs
AA seq
1641 aa
AA seq
DB search
MNGRSDLEDSDEEDVVRKTLQQLEEAHASDDGLGEEDAVDEDLNEEEGANNGGEEEEQEK
NGEDLQDSSDEEEEGQDEYDMDDKFLVGDEDEEDEEGEEEGTEEERKRRRRKRRKEAELD
EEDYELIGLRPPRPTEQRKRIRKLADTGQGTTAERLKEDLFGPEDEGLEDEDDDDVAAPA
PRQEQRQDRDFDDGLEEEDEFADFLDYDDEGGVPGEGRRRRRERAQGLPPGISSAAFHEA
QEIFGDVSDLLEEYGNRRRQVVEDDDREDDAILEGDYDDEEAEERQRELEERRQARAMRK
VTEAVEPELMARAMLRPEDDVIRATDLPEREQLRPPIPLDNPDHRACAEWIHEHLVGARS
SEKQFETEILCLGRREVDGPPPDGRLEWNDAEIKEGLTDLSRGERAVRERRSVRAFKAWL
TDDQAQEKLKQNITNVLADMFDSHFEVPYIAQYRKQVADELLAMRKGDVPNVTSKDESRR
RQEKRQPEMPVGVVQAKHRRIRRWDVLWYVHSMAMRWRALARRKEIRERAYQDALERAPE
NAQLTIDRLLDTLRKAESPEEVADVEAKYKLKAAELAEGIADLNIDDQAPLTRRPKKISA
YETLRKAGLEPVVREMVISAQELGENLESQYKKHDCIDPRMMPEEFAAEHVVPGSAFDSP
EALLHGARQMAVSEVVAEPEVRRFVRNKFMPAAVISTEPTPQGETIIDAFHQYGRVKRLR
NKPVNMFEGEEDFLCIVQAEKESLLTVSIEVPEEELEGDLIKSLAEFYVSPGTSISANAW
NEQRMAILHEAVQQRLLPAFALELRGRLLADARHAALHHVRTVEDDEVVERRRFMAVCWG
PGDPATTLAMLDDAGQLSDILFAGQLSGPIRHSRDGLFIDQSKVKDAERIRDFILEHRPH
VVLVGATNLHCKQLHGDLRAIMDHILEHHPQFITRSDVGDVDIVYADETLAALWQTSAAA
QQDMGDQPPLVRRAVALARCALDPLAVLASLCGPSAEILGANLHPLQELLPKQDLLAVAE
RICITATNQVGVDINRVAHNAWQAAPMQFVAGLGPRKAQALLRTVQREQHVTTRLDMWKE
FGVLGKNVFRNCAGSIRVAASGQDMGTADMVPLDDTRVHPSFYDTTACLAQLALGSDRPD
PRNGDTHAVDRVLSKPQLIESLNLMDVLERFKDDASLGKPLSTLRDICFELVQPNGELRV
EADRMGDDQAFWLLTGESPETLKPGRLVTATVMSSGRDDARVRLTDFGGVEGIVRRGDVS
SNGEDISPADRMQRGQTITARIKLVTPTQFVVELTTASNDLMNDSAWEKEYCAKNDNYYY
VLSEAEKAQRAVAEAKAQRSRQIVSRPIRHPYFKNVNAPQATELLKDAAVGSYLLRPSSR
GITQITLTIKVHGSEPDGQGTPVYMHHEVREGKKEEGVGAHLRLGRPLSITLTGGRIEEY
EDLDEILARFADPLVANLKQVMRHRKYREGYWEGHEGLKEQLMAEKAQTKGGAVYLLGCK
LDTPGTFYLGYIINTNPHREYFTVTPDGFYFRHEVRSKVDSVIGLFKQQPVVNRDSAPAA
PAAQPRATQSRSAQPPLPPPPPPPAYPGAQYGGSQGSDWSAVMQQQQQQQPQQAYGQQQW
PAASGYPMQPQQQPGYSAYSR
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaggtcagacctagaagattcagacgaggaggatgttgtgaggaaaacactc
cagcaactggaggaagcccatgcaagcgacgacggtctgggcgaagaagatgccgttgac
gaggatctcaatgaggaagaaggtgccaataatggcggagaggaggaggaacaagagaaa
aatggagaggaccttcaggactcgtcagatgaagaggaggagggccaggacgaatatgac
atggacgacaagttcctggtaggcgacgaggatgaagaagatgaggaaggagaggaggag
ggcaccgaggaagagaggaagcggaggaggcgcaagagaagaaaggaggctgagctagac
gaagaggactatgaactcattggcctgcgtccgccgcggcctacagagcagcgcaagcgc
atcaggaagctggcagacacaggccaggggactactgccgagcggctgaaggaagacctt
tttggtcctgaggatgaaggtcttgaggacgaggatgatgatgatgtggcagcgccggcg
ccgaggcaggagcagcggcaggacagggattttgatgacggcctggaggaggaggatgaa
tttgcagacttcctggattacgatgacgaggggggtgtgcccggcgagggccgccggcgc
cggcgggagcgcgcgcagggtctgcccccgggcatctcctcagccgctttccatgaggcg
caggagatctttggggacgtgagtgatttgttggaggagtatggcaatcgcaggcggcag
gtggtggaggatgatgacagggaggatgatgctattttggaaggagactatgatgatgag
gaggcagaggagcgccagagggagctggaggagaggcggcaggcgcgggcgatgcgcaag
gtgacggaggcggtggagccggagttgatggcgcgcgcgatgctgcggccggaggatgac
gtcatccgcgccaccgacctgcccgagcgcgagcagctgcggccgcccatccccctcgac
aaccccgaccaccgcgcctgcgccgagtggatccatgagcacctggtgggggcgcgcagc
agcgagaagcagttcgagacggagattttgtgcctgggaaggcgggaggtggatgggccg
ccgcctgatgggcgcctggagtggaacgatgctgaaatcaaggaaggtctcactgacctg
tccagaggagagagggcggtccgggagcggaggagtgtgcgagcattcaaggcatggcta
acggatgaccaggcccaggagaagctgaagcagaacatcaccaatgttctggccgacatg
tttgacagccacttcgaagtcccttacatcgcccagtacaggaaacaggtggcggatgag
ctgctggccatgcggaaaggggatgttccaaatgtgacgagcaaagatgagtcgcgcagg
cggcaggagaagcggcagccggaaatgccggtcggcgtcgtgcaggcgaagcacaggagg
atccggcggtgggacgtgctgtggtacgtgcacagcatggcgatgaggtggcgagctctg
gcgcggcgcaaggagatccgtgagagggcttaccaggacgcccttgaacgcgcgccagag
aacgctcagctcaccatcgaccgcctgctcgacaccctccgcaaggccgagagccctgag
gaggtggcagatgtggaggccaagtacaagctgaaggccgctgagctggccgagggcatc
gccgacctgaatattgatgaccaggcgcccctcacccgccggcccaaaaagatctcggca
tacgagacactcagaaaggctggtttggagccggtggtgcgggagatggtcatcagcgca
caggagcttggggagaatctggagagccagtacaagaagcatgattgtattgaccccagg
atgatgcccgaggagtttgcggcagagcacgtggtcccgggctctgcctttgactcacca
gaagcgctgctgcacggcgcgcgccagatggccgtcagtgaagtggtggcggagcccgaa
gtgcgcagatttgtccgcaacaagttcatgccagcggctgtcatcagcacagagccgacc
ccgcaaggcgagacgatcatagatgcattccaccaatacggccgtgtgaagcgcctgcgc
aacaagccggtcaacatgttcgagggcgaggaggacttcctctgcattgtgcaggccgag
aaggagagcctgctcacagttagcatagaggtgccagaagaagagctggagggcgatctg
ataaagtccctggcggagttctatgtgtccccggggacgtccatcagcgccaacgcgtgg
aacgagcagcgcatggcaatcctgcacgaggccgtgcagcagcgcctgctgccggcgttt
gcgctggagctgcgcggccggctgctggccgacgcccgccacgccgcgctgcaccacgtg
aggacggtggaggatgatgaagtggtggagcggcggcgtttcatggcggtgtgctggggc
ccgggcgacccggcaaccacgctcgccatgctagacgacgccggccagctcagcgacatc
ctctttgccggccagctcagtggccccatccgccacagccgcgacggcctcttcatagac
cagagcaaggtgaaggatgctgagcgcatcagggacttcatcctggagcaccggccgcac
gtggtgctggtgggagccacgaatctgcactgcaagcagctgcacggcgatctgcgcgcg
atcatggaccacattctggagcaccacccgcagttcatcacgcgctccgatgtcggcgac
gtagacattgtgtacgcggacgagacgctggccgctctgtggcagacctccgccgccgcg
cagcaggacatgggcgaccagccgcccctcgtgcgccgcgcggtggcgctggcgaggtgc
gcgctggaccctctggcggtgctggcgtcgctgtgcggcccctcggccgagatcctgggc
gccaacctgcacccgctgcaggagctgctgcccaagcaggacctgctcgccgtcgccgag
cgcatctgcatcactgccaccaaccaggtgggcgtggacataaacagggtggcccacaac
gcgtggcaggcggcgccgatgcagtttgtggcgggcctggggccgcgcaaggcccaggcg
ctgctgcgcaccgtgcagcgcgagcagcacgtcaccacccgcctcgacatgtggaaggag
tttggcgtgctcggaaaaaacgtcttcaggaattgcgcggggtcgatccgcgtggcggcg
agcgggcaggacatggggacggcggacatggtgcccctggacgacacgcgcgtgcacccc
tccttctacgacaccaccgcctgcctcgcgcagcttgccctcggctctgatcggcccgac
ccccgcaacggtgacacccacgccgtcgaccgcgtgctctccaagccccagctcatcgag
tccctcaacctcatggatgtgctggagcggttcaaggatgatgcctcactgggcaagccg
ctcagcacgctgcgggacatctgcttcgagctggtgcagcccaacggagagctgcgagtg
gaggctgatcgcatgggggacgatcaggccttctggctgctgacgggggagtcgccggag
acgctcaagccggggcggctggtgacggcgacggtgatgtcgtccgggcgcgacgacgcg
cgcgtgcggctgacggatttcggcggcgtcgagggcattgtgcgccgcggcgacgtgtcg
tccaacggcgaggacatctccccggccgaccgcatgcagcgcggccaaaccatcaccgcc
cggataaagctggtgacgcccacacaatttgtggtggagctgacaacggcttccaacgat
ctcatgaacgacagcgcctgggagaaggagtactgcgcaaagaacgacaattactactac
gtcttatcagaggcggagaaggcgcagcgggcggtggcggaagccaaggcgcagcgctcg
cggcaaatcgtgagtcgccccatccggcacccctacttcaagaacgtcaacgcgccgcag
gccaccgagctgctgaaagacgcggccgtgggctcctacctgctgcggccctcctcccgc
ggcatcacccagatcaccctcaccatcaaggtgcacgggagcgagccggacgggcaggga
accccggtgtacatgcaccacgaggtgcgggaggggaagaaggaggagggcgtcggcgcg
cacctgcgcctgggccgcccgctcagcatcacgctgacggggggccgcattgaggagtac
gaggacctggacgagatcctcgctcgcttcgcagatccccttgtcgccaacctcaagcag
gtcatgcgccacaggaagtacagggaggggtactgggaggggcatgagggcttgaaggag
cagctgatggcggagaaggcgcagacaaaggggggcgctgtctacctgctgggctgcaag
ctggacacgcccggcaccttctacctgggctacatcatcaacaccaacccccaccgcgag
tacttcaccgtcacccctgacggcttctacttccgccacgaggtgcggtcaaaggtggac
agtgtgatcggcctgttcaagcagcagccggtggtcaacagggactcagcgcctgctgcg
ccggccgcgcagcctcgcgcaacacagtcgcgctcggcccagccgccgctgccacctccg
cccccaccgccagcctatcctggcgcgcagtatggcgggtcgcagggctcggactggtca
gcagtaatgcagcagcagcagcagcagcagccgcaacaggcgtatggtcagcagcagtgg
cctgcagcttcaggctacccgatgcagccccaacagcagccgggatacagcgcctactca
agatga
DBGET
integrated database retrieval system