KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_52111
Entry
COCSUDRAFT_52111  CDS       T02914                                 
Name
(RefSeq) breast carcinoma amplified sequence 2
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSUDRAFT_52111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_52111
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_52111
Spliceosome [BR:csl03041]
 Complex B
  Other components
   Prp19 complex
    COCSUDRAFT_52111
 Complex C
   Prp19-CDC5 complex
    COCSUDRAFT_52111
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    COCSUDRAFT_52111
SSDB
Motif
Pfam: BCAS2 ATG17_like FlxA LARA_dom GyrB_insert
Other DBs
NCBI-GeneID: 17045269
NCBI-ProteinID: XP_005651798
JGI: 52111
UniProt: I0Z9D5
LinkDB
AA seq 262 aa
MVQPLALDVAPHGEATGWRKDEHLIDALAYIDPLSQEEKTKVDALIMEELKNSVKRPQDY
LKEMPALPDFNLEGHPVLKAEYERVKAGQPMAQLDTTRYRLDEPPLNRRNDVAAWKAALE
NAHSQLEHQYNRLLNMELLLQFGPKAWQAHIRHLEVGHKRLEDMLAETRAAVEAVNRERK
VSQLQAQEEMTDYEGRWATTVAKNREIDAACRELEAEIASLRAQLPAQEEGAPKDPFGVR
EGVEEDAHNPGANGQASEMDES
NT seq 789 nt   +upstreamnt  +downstreamnt
atggttcagcctttggctctggatgttgcaccgcatggagaggcaactgggtggcgcaaa
gacgagcacctcatcgatgctcttgcatacattgatccgctttcacaggaagaaaagaca
aaggtcgatgcactgatcatggaagagctgaagaatagcgtaaaaagaccacaagactac
ttgaaggagatgcctgctctgccagacttcaatctggaggggcacccagtcctgaaagcc
gagtatgagagggtgaaggcagggcagcctatggcacagcttgacaccacgcggtacaga
ttagacgagccgccgctgaatagaaggaatgatgtcgccgcctggaaggcagccttggaa
aatgcgcacagtcaacttgagcaccagtataacagactgctgaatatggagctcttgttg
caattcgggccaaaagcatggcaggcccacatcaggcacctcgaagtgggccacaagagg
ctggaggacatgctggcagagaccagagcggcagttgaggcggtgaacagggagcggaag
gtgtcgcagctgcaggcgcaggaggagatgacggactatgagggccgctgggccacaacg
gtggcgaagaaccgcgaaattgatgcggcctgcagagagctggaggcagagattgcctcc
ctcagagcccagctgcctgcccaggaagagggtgcacccaaggacccattcggcgttagg
gaaggcgtggaagaggatgcacataatccgggggcaaatgggcaggcttcagaaatggat
gagtcttga

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