Coccomyxa subellipsoidea: COCSUDRAFT_52189
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Entry
COCSUDRAFT_52189 CDS
T02914
Name
(RefSeq) Sm-like ribonucleo protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_52189
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_52189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_52189
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_52189
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCSUDRAFT_52189
mRNA degradation factors
5'-3' decay
Lsm complex
COCSUDRAFT_52189
Spliceosome [BR:
csl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
COCSUDRAFT_52189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
17045534
NCBI-ProteinID:
XP_005652063
JGI:
52189
UniProt:
I0ZA50
LinkDB
All DBs
AA seq
117 aa
AA seq
DB search
MLPLLLLKTAQKHPVLVELKNGETYNGHMVQCDSWMNVHLREVICTSKDGDRFWRIPETY
IRGNTIKYLRVPDEVIDKVKEENYKRDEKRPAMARGRGRGRGPGGRGEELLQTFSPL
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
atgttgccattgcttcttctcaaaacagcacagaaacaccctgtgctggtagagcttaaa
aatggagagacttacaatggtcacatggtccagtgcgacagttggatgaatgtacatctc
agagaagttatctgcacatcaaaggatggagacaggttctggagaatacctgaaacctac
atcagaggcaacacaatcaagtatctgcgagtaccagatgaggtcattgacaaggtgaag
gaggagaattacaagcgcgacgagaagcgcccggccatggctcgtggcagagggaggggc
aggggtcctggaggacgaggcgaagagttgttgcagacattttctcctctgtag
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