KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_52476
Entry
COCSUDRAFT_52476  CDS       T02914                                 
Name
(RefSeq) hypothetical protein
  KO
K12830  splicing factor 3B subunit 3
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSUDRAFT_52476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csl03021]
    COCSUDRAFT_52476
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_52476
   03036 Chromosome and associated proteins [BR:csl03036]
    COCSUDRAFT_52476
Transcription machinery [BR:csl03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     COCSUDRAFT_52476
Spliceosome [BR:csl03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    COCSUDRAFT_52476
 Complex B
    COCSUDRAFT_52476
 Complex C
   U2 SnRNP specific factors
    COCSUDRAFT_52476
Chromosome and associated proteins [BR:csl03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     COCSUDRAFT_52476
    TFTC complex
     COCSUDRAFT_52476
SSDB
Motif
Pfam: Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A
Other DBs
NCBI-GeneID: 17044856
NCBI-ProteinID: XP_005651390
JGI: 52476
UniProt: I0Z877
LinkDB
AA seq 1205 aa
MYLYNLTLSRASGIQCAIYGNFSAPKAQEIVVSRGKTLELLRPDDTGRVQTIFTTEVFGC
IRSLAPFRLTGASRDYVIVGSDSGRIVILEYIKEQNYFRKIHQETYGKSGCRRIVPGQYL
AVDPKGRACLIGAMEKQKLVYVLNRDQAANLTISSPLEAHKSHNIVFSVIGLDMGFDNPV
FAAIELDYADADQDPTGEAAGNAQKQLTLYELDLGLNHVTRKWSQEVDNGANLLVPVPGG
ADGPGGVLVCAENFIIYSNQDHADVRAVIPRRTSLLIDRGVLIVSYAMHKQKSLFFFLVQ
SEYGDLYKVTLAYSGDTVTELKIKYFDTIPPCISICVLKTGFLFAASEFGNHALYQFLSI
GDDDDAVEASSAELTETQEGFQPVFFDPRPLRNLRLVDEVESLSPIMDFKVANLLKEEIP
QLYAMCGRGARSTLRVLRPGLAATEIAVSPLPGNPTAVWTLKRSVNDPFDAYIIVSFTNA
TLVLSIGETVVEVNDSGFLGTVPTLRTQLLTDDSMLQVHPSGLRHIRADRRVNEWRAPGR
RTIVKAATNEQQVVIALSGGELIYFELSPTGQLMEVEKKEMAGDVVCLDIAPVPEGRQRS
RFLAVASYDSSVRILSLDPEDMMSALAVQMVSAVPESLLFIDSPAADIAGKGEDASGAGG
LFLNIGLLNGVLLRTEVDKVTGQLSDTRTRFLGTRPPKLFAVSVRGKRSMLALSSRPWLG
YSDMGRYTLAPLSYEALDYASGFASDQCPEGFCAVSKSMLRILTLERLGEAFNQQVTRLR
YTPRKFVVHPESNMLIVAEADHAAVPLAERRAVEDGMEMDAALTEGIEFDEERAAEEEQH
GAPKNSTGRWASCIRVLDPTSLQTSSVLELDGNEAAVSLCLLRFSNWPEEGMVLAVGTVQ
GLAFYPRTADEGYIRLYRFRDSGRQLELIHKTPTGGIPGALAAFKGRLLAGVGPTLRIYE
AGKKKLLRKCEHRKLPTHIATLATSGDRIFVGDLQESMHYFRYKANENALYEYADDIAPR
HLTAALPLDYDTVAGADKFCNIFVTRLPRDVSTQVEEDPTGGKFAGAAGLLNGAPHKLED
VVNFHVGDLVTSLQRAVLQPGGREVLLYATVMGAIGAMLPFPSREDVDFFSHLEMHLRQE
HPPMGGRDHMSYRGSYFPVKDVIDGDLCEHFSQLPAAKQKSIADELERTPGEILKKLEDI
RNQVY
NT seq 3618 nt   +upstreamnt  +downstreamnt
atgtatctttacaatctgaccctgagtcgcgcctctggaatccagtgcgctatatatgga
aatttctcggctccaaaggctcaggaaatcgtggtgtctcgcggcaaaacattggagctg
ctgcgccccgatgacacgggaagagtgcagactattttcacaacagaggtgtttggctgc
atacgatctctggcaccattccgcctcacgggagcctccagggactacgtcattgtggga
tcagactcggggaggattgtgattctggagtacatcaaggagcagaactacttcaggaag
atccatcaggagacatatggcaagtctggatgccggcgcatagtgccaggacagtacctg
gcggtcgatcccaaggggcgtgcctgcctgataggggccatggagaagcagaagctggtc
tatgtgctcaatcgcgatcaggcagccaatctgaccatctcatcgccactggaggcccac
aagtcgcacaacattgtgttctctgtcatcggcttggacatgggcttcgacaacccggta
tttgcagcgatagagctggactatgcagatgcggatcaggatcccactggtgaggcagcg
gggaatgctcagaagcagctgacgctgtatgagctggacttgggtctgaaccacgtgacc
agaaagtggagccaggaggtggacaatggcgcaaacctgcttgtcccagtgccgggcggt
gctgatggccctggcggtgtgcttgtgtgcgccgagaacttcatcatctacagtaatcag
gatcatgcggatgtgcgggcggtcattccccggcgcacatcactgttgattgacaggggc
gtcctcattgtgtcctatgcgatgcataagcagaagtccctgttcttcttccttgtgcag
agcgagtatggcgatctgtacaaggtcaccctggcatactcgggcgacacggtgaccgag
ctcaagatcaagtactttgacaccatcccgccctgcatcagcatctgcgtcctcaagaca
ggattcctctttgcagcgtcagagtttggcaaccacgccctctaccagttcttgagcata
ggcgatgacgatgatgcggtggaggcaagctcggcagagctgacagagactcaggagggc
ttccagcccgtgttcttcgaccctcgtcccctgcgcaacctgcggcttgtggacgaggtg
gaaagcctgagtcccatcatggatttcaaggtggccaatctgctgaaggaagagattccg
cagctgtatgccatgtgcggccgtggtgcacggtccactctgcgcgtgttgcggccaggc
ttggcggccacggagattgcagtgtcccccctgcccgggaaccccactgctgtgtggacc
ctgaagcgcagcgtcaacgacccctttgatgcctacatcatcgtttctttcacaaacgcc
actctggtgctgtcaattggagagactgtggtggaggtcaatgacagcggcttcctgggg
accgtgcctacgcttcgcacacagctgctcacggatgacagcatgctgcaggtgcatccg
agcggcttgcggcacatccgagcggatcgtcgtgtgaatgagtggcgggctccagggcgg
cggaccattgtcaaggcagccacgaatgagcagcaggttgtgattgcactgagcggcggc
gagctcatctactttgagctgagcccaactgggcagctgatggaggtggagaagaaggag
atggccggggacgtggtctgcctagacattgcgcccgtgccagagggccgccagcgctca
cgtttccttgccgtggcttcctatgactcctcggtgcgcatattgagcctggatcccgag
gacatgatgagcgcgctggcggtgcaaatggtgagcgccgtgccggagtccctcctcttc
attgactcgcccgcggccgacattgcagggaagggagaggatgctagtggcgctgggggc
ctcttcttgaacatcgggctgctgaatggtgtgctgttgaggacggaggtggacaaggtg
acggggcagctcagcgacacgcgcacgcgcttcttaggcacccggccgcccaagctcttt
gcagtgtctgtgcgcggcaagcgctccatgctcgcgctgtcctccaggccctggctgggg
tactcggacatgggcaggtatacgctggcgccgttgtcatatgaggcgctggactatgca
tccggctttgcctcagatcagtgccccgagggcttctgtgctgtgtccaagagcatgctg
cgcatcctcacactggagcgcctcggggaggccttcaatcagcaggtgacccggctgcga
tacacgccgcgcaagtttgtggtgcacccggagtccaacatgctcattgtggcggaggcg
gaccatgcggcggtgcccctggctgagcgcagggccgtggaggacggcatggagatggac
gccgccctcacggaaggcatagagtttgacgaggagagggcggcggaggaggagcagcat
ggtgcgcccaagaactcgactggcagatgggcctcatgcatcagggtgctcgaccccaca
tccctgcagacctccagtgtgctggagttggatggcaacgaggctgccgtgagcctctgc
ctgctgcgcttctcaaactggccggaggaaggcatggtgcttgccgttggcacagtgcaa
ggcctggcattctacccacgcactgcagacgagggctacatcaggttgtaccgcttcagg
gacagcgggcggcagctggagctcatacacaagacgcccacggggggcatcccgggcgcg
ctggccgcattcaaggggcggctgctggccggcgtggggcccacgctgcgcatctatgag
gctggcaagaagaagcttctgcgcaagtgtgagcaccgcaagctgcccacgcacatcgcc
acgctggccaccagcggagaccgcatctttgtgggcgacttgcaggagtccatgcactac
ttccggtacaaggcgaatgagaacgccctgtacgagtacgcggatgacatagcgcccagg
catctgacggccgcgttgcccctggactacgacacagttgccggcgcagacaagttctgc
aacatcttcgtcacccgcctgccccgggatgtctccactcaggtggaggaggaccccaca
ggaggcaagtttgcgggcgcggctggcctcctgaacggcgcaccccacaagctggaggat
gttgtcaacttccacgtgggcgatctggtcacctccctgcagcgggctgtgctgcagccg
ggtggcagagaagtgctgctatatgcgacggtcatgggcgcaataggtgcaatgctaccc
tttccttccagggaggatgtggatttcttcagccatttggagatgcacctgcggcaggaa
caccctcccatgggtggacgtgaccacatgagctaccgtggctcctacttcccagtgaag
gatgtcattgacggagacctgtgcgaacatttctcgcagctaccagcagccaagcagaag
agcattgctgacgaattggagagaacgcccggagaaatcctcaagaagctggaggacatc
aggaatcaagtgtactag

DBGET integrated database retrieval system