KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_52805
Entry
COCSUDRAFT_52805  CDS       T02914                                 
Name
(RefSeq) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCSUDRAFT_52805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_52805
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     COCSUDRAFT_52805
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     COCSUDRAFT_52805
SSDB
Motif
Pfam: EXOSC1 ECR1_N S1_RRP4
Other DBs
NCBI-GeneID: 17043239
NCBI-ProteinID: XP_005649781
JGI: 52805
UniProt: I0Z3L8
LinkDB
AA seq 190 aa
MGDLVVCPGERLFKAAEYVASSGTYVKGDHICASLVGIPQSFAGSSSAEDKRPVVEVLRS
GSRAKVPETGNIVIAKVNKVNPRLASASLLCVNTQPLTDSFSGIIRQQDVRATEIDKVEM
YSCFRPGDLVRAEVISLGDSRSYYLSTAKNDLGVVYAKSLNGAPMIPLSWQEMQCPVTKV
VEKRKVAKVN
NT seq 573 nt   +upstreamnt  +downstreamnt
atgggagatttagtcgtgtgcccaggggagaggctcttcaaggcggccgagtacgtggct
agttctggtacttacgtcaagggagatcacatctgcgcctctttagtgggaatccctcaa
tcctttgcaggcagctccagtgcagaagacaagagaccggtggttgaagttctccgcagc
ggctcaagagcaaaggttcctgaaactggcaacatcgtcatagcgaaggtcaacaaagtc
aatccaagattagcttcggccagccttctgtgcgtgaacactcagcccctcaccgacagc
ttttctgggatcatacggcagcaggatgtccgtgctacagaaatcgacaaggttgagatg
tactcctgcttccggcctggggatctggtgagagcagaggtcatctcgctgggcgactca
cggtcctactatctttcaacagccaagaacgacctcggagtggtgtatgcaaagagcctc
aatggtgcacccatgatccccctcagctggcaagagatgcaatgcccagtgacaaaggtg
gtggagaaacgaaaggtggccaaggtcaactga

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