KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_53022
Entry
COCSUDRAFT_53022  CDS       T02914                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03018  RNA degradation
csl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSUDRAFT_53022
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCSUDRAFT_53022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_53022
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_53022
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCSUDRAFT_53022
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCSUDRAFT_53022
Spliceosome [BR:csl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    COCSUDRAFT_53022
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 17042635
NCBI-ProteinID: XP_005649177
JGI: 53022
UniProt: I0Z1W4
LinkDB
AA seq 99 aa
MASDAGLAPLVDSTISVITNDGRVIVGILRGYDQATNLILDECHERVYSSKAGVEQVVLG
GLHVVRGDNIAVVGEVDDEIEQGLDLSAIRATPLAPVQH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggctagcgatgctggccttgcccccctcgttgatagcacaatttcagtgatcacaaat
gatgggcgagtcatagtgggcattctgcggggctatgatcaagctacaaacctcatactg
gatgagtgtcacgagcgggtgtactccagcaaggctggcgtggagcaagtagtgctgggt
ggactgcatgtagtaaggggcgataacatagctgttgtgggagaggtcgacgatgagatt
gagcaagggctggatctgagtgccattcgtgccacgccactcgcccctgttcagcattga

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