Coccomyxa subellipsoidea: COCSUDRAFT_53470
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Entry
COCSUDRAFT_53470 CDS
T02914
Name
(RefSeq) protein prenylyltransferase
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_53470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_53470
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_53470
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
COCSUDRAFT_53470
Spliceosome [BR:
csl03041
]
Complex B
Other components
Prp19-related factors
COCSUDRAFT_53470
Complex C
COCSUDRAFT_53470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_2
TPR_8
TPR_12
RPN7
NRDE-2
PPR
TPR_16
Motif
Other DBs
NCBI-GeneID:
17040936
NCBI-ProteinID:
XP_005647492
JGI:
53470
UniProt:
I0YX29
LinkDB
All DBs
AA seq
904 aa
AA seq
DB search
MGPDGAQTPLSNGTSSLDHLQPTDEDLLYEEELLRNPYSLKMWLRYLDARKDAPAFKRYV
LYERALKALPVSYKLWHAYLRERQMAVRGLAITDPAVSSLNNTFERALVSMHKMPRIWLE
YLEFVVEQGWLTRTRRTFDKALCALPITQHDRIWVLYLKFLMRPGTPPETAVRVYKRYLR
LEPTHAEEYIAYLKAQGLWGEAARKMAELVNDDAFRSLEGKSKHQLWLELCDIITKHPKD
VTGLKVDAVLRSGIRKFTDEVGRLWTSLADYYIRQGMYESARDVYEEGLTTVTTVRDFSL
IFDTLTQFEETLLHHKLEQGGGEDEPEPAMNGAEESDGEDFLLKDDEDDTDLRLARLEHL
MERRPELLSSVMLRQNPHNVHEWHKRVKLFNGNPHKQILTYTEAVTTVDVNKAIGKLQTL
WTGFARFYERHGDLENARVIFDKATQVEFKYVDSLATVWCEWAEMELRHKNYKRALDLMR
RATYTPDTINRRAAAEAEREGPVQGRLYRSLKLWAFYCDLEESLGTLESTRAVYDRILDL
RIATPQIILNYALFLQEHKYWEESFRVYERGVALFKYPHVRDIWLAYLQQFVQRYAGSKL
ERARDLFKQALSQAPPEESKALFLQYAALEEAHGLARSAMEVYDRAVKTVPAADRLAVYD
LYLARAHEFFGLGKVREIYETAIEATPPYGVSDEDCKRMCLRYSALERKLGEVDRARAIL
VHASSLADPRRDPGFWKAWNDFEVAHGNEDTFREMLRIKRSVAASFSQIHYNTTIVEAAT
TAAPTGEEGGKRKRGEDEMAALEAEVVTGTRLPGFVSGGTVQPDQRALQEGTGADAPAAP
GPSVPAVANPEDIDLDEGDAEEEAEEAGANIQLETKPVPEAVYGVGGEQLGALDRFKKRK
TEGQ
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgggacctgatggggcacagacgcctctgtcaaatgggacatcgtcgttggatcacctg
caaccgacagatgaggacctcttgtacgaagaggaattgcttcgcaatccatattcattg
aagatgtggttgagatatctggatgctcgcaaggacgcccccgcgttcaaaagatatgtt
ttgtacgagcgtgccttgaaggctcttcctgtcagctacaagctgtggcatgcatatcta
cgggagcgccagatggcagtgcgaggactggccattacggaccctgccgtgtcgtcactg
aacaacacctttgagcgtgcgcttgtgtccatgcacaagatgccgcgcatctggctggag
tacctggagtttgtggtggagcaggggtggttgacgcgaacgaggaggacctttgacaag
gcgttgtgcgcgctgcccatcacccagcatgaccgcatctgggtgctctacctgaagttt
ctgatgcgcccgggaacgccacctgagacagcggtgcgcgtgtacaagcgctacctgcgc
ctggagcctacgcatgcggaggagtacattgcttacctcaaggcacagggtctgtggggc
gaggctgcgcgcaagatggcggagctggtgaatgacgacgccttccgctcgctggagggc
aaaagcaagcaccagctctggctcgagctctgcgacatcatcaccaaacaccccaaggat
gtcaccggcctcaaggtcgacgccgtgctgcgctccggcatccgcaaattcaccgacgag
gtgggccggctgtggacgtcgctggcggattactacatccggcagggcatgtacgagagc
gcacgcgacgtgtacgaagaggggctcaccaccgtcaccaccgtgcgcgatttctcgctc
atcttcgacacgctcacgcagtttgaggagaccctgctgcaccacaagcttgagcaaggc
ggtggcgaggatgagccggagccggccatgaacggggcggaggagagcgatggggaggac
ttcctgctgaaagacgacgaggacgacactgatctcaggctggcgcggctcgagcacctg
atggagcggcggccggagcttctgtccagcgtcatgctgcgtcagaatccgcacaatgtg
cacgaatggcacaagcgcgtcaagcttttcaacggcaacccccacaagcagatcctcacc
tacaccgaggctgtcaccaccgtggatgtcaacaaggcgattgggaagctgcagacgctt
tggacgggctttgctcgcttctacgagcgccacggagacctcgagaacgcgcgtgtcatc
tttgacaaggccacgcaggtagagttcaagtacgtggatagcctggcgacggtgtggtgc
gagtgggcggagatggaactgcgccacaagaactacaaacgcgcgttggatctcatgcgc
cgcgccacctacacccccgacaccatcaaccgccgagcggcggctgaggcggagcgggag
ggaccggtgcaggggcggctgtaccgcagcctgaagctgtgggccttctactgcgacctg
gaggagagcctgggtactttggagtccacgcgcgcagtctacgaccgaatcctcgacctc
cgcatcgctacgccccagatcatcctcaactacgccctcttcctccaggagcacaagtac
tgggaggagtcgttccgcgtgtatgagcgcggggtggcgctattcaagtacccgcatgta
cgcgacatctggctcgcctacctgcagcagttcgtccagcgctatgccggctccaagctc
gagcgcgcgcgagacctcttcaaacaagccctctcccaggcgccgcccgaagagagcaag
gcgctgttcctgcagtatgcggcgctggaggaggcgcacggcctcgcgcgcagcgccatg
gaggtctacgaccgcgccgtcaaaaccgtgccggccgccgaccgcctcgctgtctacgac
ctgtacttggcgcgcgcccacgagttcttcggtcttggcaaggtgcgggagatctacgag
acggcgatagaggcaacgccgccatacggcgtgtcggacgaggactgcaagcgcatgtgc
ctgcgctactcggcgctcgagcggaagctgggagaggtcgaccgtgcgagggcgatcctt
gtccatgcatcctccctggccgacccgcggcgcgaccccggcttctggaaagcctggaac
gacttcgaggtcgcgcacggcaacgaggacacctttagggagatgctgcgtatcaagcgc
agtgtggcggcgtctttcagccagatccactacaacaccaccatcgtagaggcagccacc
actgccgcacccacaggcgaggagggtggcaagcgcaagaggggagaggacgagatggcg
gctctggaggcggaggtggtgacaggcacgcggctgccgggctttgtgtcgggcggcact
gtgcagccagaccagcgcgcactgcaggaagggaccggcgcagacgcgcccgccgcgccc
ggccccagcgtgccggctgtggcaaacccagaggacattgatctggacgagggcgatgca
gaggaggaggcagaggaagctggggccaacatccagctggagaccaagcccgtgccggaa
gcagtgtatggggttggaggggagcagcttggggcattggatcgcttcaaaaagaggaag
acagagggacagtaa
DBGET
integrated database retrieval system
