Coccomyxa subellipsoidea: COCSUDRAFT_54896
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Entry
COCSUDRAFT_54896 CDS
T02914
Name
(RefSeq) DEAD-domain-containing protein
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_54896
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_54896
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_54896
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCSUDRAFT_54896
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
COCSUDRAFT_54896
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
17036394
NCBI-ProteinID:
XP_005642988
JGI:
54896
UniProt:
I0YJ75
LinkDB
All DBs
AA seq
674 aa
AA seq
DB search
MEETEEYYDEDGPGNDEDENVQRARLSLASIFGEAEVLEVDETQQDESLLLANCGLSDET
VAALGKRNIKALFPIQKHVFGPARAGRDLIGRARTGSGKTLAFALPVLENLLKENSQSPP
QRGRSPRCIILAPTRELAKQVEKEFQESAPGLNVGCFYGGVDIGGQIRQLRSGVDVAVGT
PGRVIDLINRNCLDLSLTRFVILDEADMMLSMGFSEDVEIILDSVPAERQTMLFSATMPS
WVKNITRKHLKNPALVDLVGDAQSGKMPDAIKTMAVHVTQEARRSILVDLITVHALGGKC
IVFTQTKREADEVAASLSLVHPCEALHGDISQAQREQVLKNFRNGKFTALVATDVAARGL
DIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGSTIAVVLPRDRSYFRRMCAEIKLKDV
EYISSPSPSAVMEASAKQVLRRLDNVDEKVIEFFAPAAKLVLERGDKHDAMCRALAALSG
LIEVPKPRSLITQEVGLVTMRVMSRPGRITLPGHVMTIVRNVIGADGVTGLGRVRLLQDD
RAGMEGAAFDVPQEIADKMMENVEELTKRGFELDMPISLPEEPFRGGGGGGGGRGGGRGG
YGGARNQGGYGRSSGGYSSRGGGGGGYGGGGGGGGYGSRGGGSYGGGDRRSSYGGGRSGG
GGGGSRGYSGGDSW
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacagaggagtactacgacgaggatggccctggcaatgacgaggatgagaac
gtgcagagggcgcgcctctctctcgccagcatctttggcgaagcagaggtcttggaagtg
gacgaaacacagcaggacgagtcactcctgctggcgaactgcggcctgtcggacgagacg
gtggcggccttgggcaagcgcaacataaaggcgctcttccccatccagaagcatgtcttc
ggacccgcgcgcgccgggcgcgacctcatcggacgcgcgcgtaccggctccggcaaaact
ctcgccttcgcgctgccggtgctcgagaatctgctcaaggagaacagccagagcccacca
cagaggggccggtccccccgctgcataatcctggcgcccacgcgcgagctggccaagcag
gtcgagaaggagttccaggaatccgcgcccggcctcaacgtcggctgtttctacggaggt
gtggacattggcgggcagatcaggcagctgcgttcaggggtggatgttgcggtgggcacg
cccggccgagtcatcgacctcatcaaccgcaactgccttgacctctccctgacccggttt
gtcatcctggacgaggcggacatgatgctttccatgggattcagcgaggacgtggaaatt
attctggacagtgtgccggctgagcgccagaccatgctcttctctgccacaatgccctcc
tgggtcaagaacatcacacgcaagcacctcaagaacccggccctcgtggacctcgtgggg
gacgcgcagagcggcaagatgcccgacgccatcaagacgatggctgtgcacgtgacgcag
gaggccagacgcagcattctggtggatctgataactgtgcacgcgctgggcggcaaatgc
attgttttcacacagacgaagcgtgaggccgatgaagtggcggcgtcactttcgctcgta
cacccctgcgaggcgctgcacggtgacatctcacaggctcagcgcgagcaggtgctcaaa
aacttcaggaatggcaagtttacagcgctcgtcgccacagatgtcgccgctcgcggcctt
gacatcccagacgtcgacctggtggtgcactatgacctgccacgcgacacagaggcgttc
ctgcaccgctccggccgcaccggccgcgccggcaagaccggcagcacgatcgccgtcgtc
ctgccgcgggaccgctcctacttccgccgcatgtgcgcagagatcaagctcaaggatgtc
gagtacatatcttcgccgagcccctccgccgtaatggaggcatctgccaagcaggtgctg
aggcggctggacaacgtggatgagaaggtgattgagttctttgcgccggcggccaagctg
gtgttggagaggggtgacaaacacgacgccatgtgccgcgctctcgctgccctctctggg
ctcatagaggtgcccaagcctcgcagcctgatcacacaggaggtgggattagtcacaatg
cgcgtcatgtctcggccggggcgcatcactctccccgggcacgtcatgacgatcgtgcgc
aatgtcatcggcgctgacggcgtcaccggcctcggccgcgtgcgcctgctgcaggacgat
cgcgccggcatggagggtgcggcgtttgacgtgcctcaggagattgcagacaagatgatg
gagaatgtggaggagctgactaagcgcggtttcgagctggacatgcccatctcactccca
gaagagcccttccgcggcggcggtggcggcggcggcggccggggtggcggccgtggcgga
tacggaggtgccaggaatcagggaggctacggcaggagtagcgggggatacagcagcagg
ggtggtggcggcggcggctacggcggcggcggtggtggtggtggttacgggtcacgagga
ggtggcagctacggcggcggtgaccgtaggagtagctacgggggcggtcgcagcggcggc
ggtggcggcggcagcagaggctattccggcggggactcgtggtag
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