Coccomyxa subellipsoidea: COCSUDRAFT_57746
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Entry
COCSUDRAFT_57746 CDS
T02914
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_57746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_57746
03012 Translation factors [BR:
csl03012
]
COCSUDRAFT_57746
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCSUDRAFT_57746
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
COCSUDRAFT_57746
Translation factors [BR:
csl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
COCSUDRAFT_57746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
DEAD
OB_NTP_bind
Helicase_C
R3H
Ank_2
HA2_N
AAA_22
ATPase
Ank
AAA_19
Ank_5
nSTAND3
Ank_4
PhoH
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
17038578
NCBI-ProteinID:
XP_005645146
JGI:
57746
UniProt:
I0YQD3
LinkDB
All DBs
AA seq
1212 aa
AA seq
DB search
MGGFVQSYVFPPGLSNHDRAVVHAECRKYGFTSKSQGKNDNRQVTVYKPAASGRLVKEAF
DLPIAPASLDVLQAYYERHPPSDAELAAAMQGGAVASLGAAEHQVHQQVSGRKRRSTVGA
AHFPEEEVRRHHAAWARAQQTPAVAAITATRNALPIAPYRNQILQAIANNQVVLVAGETG
CGKTTQVPQFLLEDAWAAGRGCRIMCTQPRRISAISIAERVAAERGEKCGTSVGYTIRLE
SKGGPGSSLMFCTNGVLLRMLTQGEGLDDITHIIVDEIHERDRFADFLLILLRDLLLAHP
NLRVVLMSATLHIELFSNYFGGCPVIEVPGFTYPVTDMYLEDVLRLIGYQDALLAQQDGN
SSRRGHGGILPPAPNRAEPSDIPKEQREAIESAIMQAFLHGDDEHFDHLLEMTGANSMDE
ACSTACLNVTHMSTGATALMAAAGKGRLEDVAALLTAGADPLLRSRDGSSAQDWATKFGH
SEVADFLSSHMEVAQTSSHAEVSALAVSRYQASTDADEVDLSLIEALLMYICGEGPYSRA
EEQGASLGAVLIFLPGWDEIIRLKEQLEGRQSALSGSKYMVLPLHSMVPAAEQRKVFKRA
PVGVRKIVLATNIAETAVTIDDIVCVINSGRHKEKSYDPYTNVSTLQATWISKASERQRR
GRAGRCQQGVCFHLYSRVRSEGLADFQLPELQRSPLDELSLQVKLLEGAGFGHTSVAEFL
DKAVEPPPAVSVANAVRLLQDIGAFEAPGERLTLLGRHLAALPLPPRIGKMLLYGVLFGC
LDPILTVSCCMAYRDPWVLPIEATARRAASAAKQTLSDGAGGCSDHLALVRAYNTWSAEK
GRGREYAYAAATHISGGTMCMIEGMRGQLLGELTARGFVSSLDAASVNARDVGLVRSVMA
AGFYPLVGRLLSKKLERGQAPRKSAHILTAKEEKVKIHPSSVNFQLDAPVVRKGEPRPCP
IIIFEEVTRNESVLAVRQCTAVNPHVLPLVAASLRVAGEVEDSDMGGWNSDSDGDGANGL
PSGPAWVDDEDMEEGMGPATQLEIDGWLSLRVPTAAAAPLLCLRQRLNTCFAAKVSNPRG
VLDEAHAGALQTAASLFSLEAGGPESGFSLEAAVPMPFSHSGGRFSAPYNANPYRGGGRG
AGRVAGRHHGGGGGHIPQHSMPSRGHVPAARGRGRSHEHMLRAMPVAAAAGDAYFDAPQL
SHSPGGRGQVML
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgggaggctttgtgcagagctacgtgtttcctcctggcctgagcaatcacgaccgcgca
gttgtccatgcagaatgccgcaagtacggcttcacgtcaaagagccaagggaagaatgac
aatcggcaagtcactgtctacaagccagcagcctcgggacgcctggtgaaggaggcattt
gacctgccaatcgcccctgcctcattggatgtcctccaagcttactatgagaggcatcca
ccatcggatgcagagcttgccgccgccatgcaagggggtgcggtggcgtccctgggtgca
gcggagcaccaggtgcatcagcaagtcagcggcaggaagcgcaggagcacggtcggcgct
gcacacttccctgaagaggaggtgcgcaggcaccatgcagcgtgggccagggctcagcag
actcctgccgtggccgccatcacagccactcgcaatgcgctcccaattgcaccatacagg
aatcagattctgcaggcgattgccaacaatcaggtggtgctggttgccggagagaccggc
tgtggcaagacgacgcaggtgccccagtttctccttgaggacgcctgggctgccgggcgc
ggctgccgcataatgtgcacgcagccgcggcgcatcagcgcaatctccatcgcggagcgg
gtggcggctgagcgcggcgagaagtgcggtaccagtgtcggctacaccatccgcctggag
tccaagggaggcccgggatcctcgctgatgttctgcacgaatggggtactgctgcgcatg
ctgactcagggggagggcctggatgacataacccatataattgtggacgagatccacgag
agggaccgctttgcagacttcctgctcatcctgctgcgagacctgctgcttgcgcacccc
aacctgcgtgtcgtgctgatgtctgctactctgcacatagagctgttctccaattacttt
ggcggctgcccggtcattgaggtgcctggattcacataccctgtgacagacatgtatctc
gaggatgtgctgaggctgatcggctaccaagatgcgctgctggcccagcaagatggtaat
tcatccagaagaggtcatggtggcattctgcctccagccccaaacagggcagagccctca
gacattccaaaggagcagagagaggctatagagagcgcaatcatgcaggccttcttgcat
ggcgacgacgagcactttgatcacttgctggagatgacaggagccaacagcatggacgaa
gcatgctccactgcgtgcttgaacgtaacccacatgagcacaggagccacggcgctgatg
gcagcagccggcaaggggaggttggaggatgtggctgcactgctgacggccggggcagac
cccctgctgcgctctcgagacggcagcagcgcgcaggactgggccaccaagttcggccac
tcagaagtggcagacttcctgagcagccacatggaggtggcgcagacgtccagtcatgcg
gaggtgagcgcgctggcagtgtctcggtaccaggcgtccacggatgctgacgaggtggac
ctgtccttgatagaggcgctgctgatgtacatctgtggcgagggcccctacagccgagct
gaagagcagggcgccagcctgggcgctgttctcatcttccttcctgggtgggacgagata
atccggctgaaggagcagctggagggccgccagagcgctctcagcggcagcaagtacatg
gtcctgcccctgcacagcatggtgcccgccgcagagcagcgcaaggtcttcaagcgggcc
ccggttggcgtgcgcaagatcgtccttgcaaccaacatcgccgaaacggcggtgacgata
gatgacatagtgtgcgtgatcaacagcgggcgccacaaggagaagagttacgacccctac
accaatgtgtccacgctgcaggccacctggatctccaaagcctctgagcgccaacgccgc
ggccgtgccggccgctgccagcagggcgtgtgtttccacctgtactcgcgcgtgcgcagc
gagggcctcgcagacttccagcttcccgagctccagcgcagccccctggacgagctcagc
ctgcaggtgaagctgctggagggtgcgggctttggccacacgagtgtggcggagtttctg
gacaaggcggtggagccaccgccggcggtgtcggtggcgaatgcggtgcggctgctgcag
gacatcggcgcgtttgaggcgcccggggagcggctgacgctgctggggcgccacctggca
gcgctgccgctgccgccacgcatcggcaagatgctgctctacggcgtcctcttcggctgc
ctcgaccccatcctcaccgtctcctgctgcatggcctaccgggatccttgggtgctgccg
atagaggcgacggcgcggcgagcggcatccgccgcaaagcagacgctgtcggacggggcc
ggcggctgcagcgaccacctggcgctcgtgcgcgcgtacaacacgtggtcggccgagaag
gggcgcgggcgcgagtacgcgtacgcagccgccactcacatcagcgggggcaccatgtgc
atgatcgagggcatgcgtggccagcttctcggcgagctcacggctcgcgggtttgtgtca
tccctggacgctgcctctgtcaacgcgcgcgatgtgggccttgtgcgcagcgtcatggca
gccggcttctaccccctggtggggcggctgctcagcaagaagcttgagagggggcaggca
ccccgcaagagcgcccatatcctcacagccaaggaagagaaggtcaagattcacccgtcc
tcagtgaatttccagctcgatgctcctgttgtccgcaagggcgagccgcgcccctgcccc
atcatcatcttcgaggaagtgactcgcaatgagtcagtcctggcagtgcgccagtgcacg
gcagtgaacccgcacgtgctaccgctggtggctgcaagtctgcgcgtggccggtgaagtg
gaggacagtgacatgggtggctggaatagcgattctgacggcgatggcgcgaatgggctg
ccttccggccctgcatgggtggatgatgaggatatggaggagggcatggggccggcgacc
cagctggagatagacggctggctgtctttgagagtgcccactgctgcggcggcgcccctc
ttgtgcctacgacagcgcctcaacacatgctttgccgccaaggtgtcaaacccacgaggt
gtcctggacgaggcgcatgcgggggcgctgcagacggcagcgtcactgttttcactggag
gccggcggccccgagagcggattctccctggaagctgccgtgcccatgcctttcagtcac
agcggcggccgcttttcagccccttacaacgcaaacccctacagaggcggcggcaggggc
gctggaagggttgcaggccgacaccatggcggcggcggcggccacatcccccagcacagt
atgccctccagggggcatgtgccggcagcgcgcggccggggccggtcacatgagcacatg
ctgcgcgcgatgccggtggcggccgcagccggcgatgcgtacttcgatgctccccagctc
agccacagcccggggggcaggggacaggtgatgctctga
DBGET
integrated database retrieval system
