Coccomyxa subellipsoidea: COCSUDRAFT_58005
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Entry
COCSUDRAFT_58005 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_58005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_58005
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCSUDRAFT_58005
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCSUDRAFT_58005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
17038272
NCBI-ProteinID:
XP_005644840
JGI:
58005
UniProt:
I0YPH7
LinkDB
All DBs
AA seq
686 aa
AA seq
DB search
MGANRKLQQEIDRTLKKVAEGIEVFDQIWEKVYDADNHPQKEKYEGDLKKEIKKLQRFRD
QIKTWISGTDIKDKTDLVEARKKVERQMERFKVCEKEMKVKAFSKEGLGQATKLDPKEKA
KNEMREWINETVDKLTAENETFDAEMESLANNNKKKNKLPPRHSHLEESIVRHKAHVTRL
EQMLRLLDNEALEPDDMTDIKEMVDDYMDRNQDSFDEFSDPDQAYEVILEQLDGLEATLP
VTMAVTHVKAKDPKEKEKEKEKEREREKQLERERAAAQAAKQQLAAQAGIKLEETDPSPE
KPAALPRKASEAGAGPKPPKEPVTPTGRTAIAVNTKADTPTAASNAPPTPVRVQTAFSPG
PTSPMASRQDHIAGSSRHTSLDTREDVATTPLAAPPPPPPPAAPSPASWAFPGDSDGFPQ
LGQAQLQQDQQRRAAAQRGAQPAGALQTSLPDKAAQPAAMATANQKLLFANAVAGRPSEL
GGQPDDAQQVALAGKDDGKLAAALLPPGQVGELLGGQGGRAAPAVLGPMASPQDTLKLLT
ACSERCKPQLADSQWQTVPPRLRPFPGGVPASYPTEKAPMVQHPALFERLDTEALFFAFY
YQPGSYQQYLAARELKRQSWRYHKQHAAWFQRHEEPKTATEEYEQGTYVYFDYNIVHDDQ
QVGWCYRLKQDFMFKYDALEDELRID
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggggcaaacaggaagttacagcaggagattgacagaactttgaagaaggttgcagaa
ggaattgaggtcttcgatcagatctgggagaaggtgtatgatgcggataaccatccacag
aaagagaagtacgaaggggacctgaagaaggaaatcaagaagctgcaacgcttcagagat
cagattaagacatggatctcggggaccgacataaaggacaaaacagatctcgtggaagca
cgaaagaaggtggagcggcagatggaaaggttcaaggtgtgcgagaaggagatgaaggtg
aaggccttctcaaaggagggtctgggtcaggctaccaagctggatcccaaggaaaaggca
aagaatgagatgagggagtggatcaacgagacggtcgacaagctcacggcagagaatgag
acctttgatgcggagatggagagcctggccaacaacaacaaaaagaagaacaagctgccg
ccgcgacattcgcacttggaggagagcatcgtgcgccacaaggctcatgtcacaaggctc
gagcagatgctgcggctgctggacaatgaggcccttgaacctgatgacatgacggacatc
aaagaaatggtggatgactacatggaccgcaaccaggactcttttgatgaattttccgac
ccagaccaggcctacgaagtcatcctcgaacagctggacggtttggaggcgacgctgccg
gtcacaatggcggtgacgcacgtgaaggcaaaggaccccaaggagaaggagaaggagaaa
gagaaggagcgcgagagggagaagcagctggagagggaacgcgctgctgcccaggccgcc
aagcagcagctggccgcccaggctggcatcaaactggaggagacggacccgtcgcccgag
aagccggccgcactgccgcgcaaggcgtccgaggcgggcgcgggccccaagccgcccaag
gagcctgtcacgcccaccggccgcaccgccattgccgtcaacacaaaggccgacaccccc
accgccgccagcaatgcgccccccacccccgtgcgcgtgcagaccgccttctccccgggg
cccacctcccccatggcctcccgccaggaccacatcgctggctcctcccggcatacctcg
ttggacacaagggaagacgtcgcaaccacgccgctggcagcgccgccaccgccgccgccg
ccagctgccccttctcctgcttcgtgggcattcccaggagactcagatggctttccgcag
ttggggcaggcgcagctgcagcaggatcagcagagacgcgcagcagctcagcgaggcgct
cagccagctggcgcattacagaccagcttgcccgacaaggcagcgcagcccgctgcaatg
gcgacagccaatcagaagctgctctttgcaaacgcagtcgcagggcggccgtctgagctg
ggagggcaaccagacgatgcccagcaggttgctctggcagggaaggatgatgggaagttg
gcggctgcgctgctgccaccggggcaggtgggagagctgctaggaggccagggcgggcga
gcagcgccggccgttctggggcccatggcatccccccaggacaccctcaagctgctcact
gcatgctccgagcggtgcaagccgcagctggcggacagccagtggcaaacggtgccgccg
cggctgcggccgttcccgggcggcgtcccggcctcctaccccaccgagaaggcgcccatg
gtgcagcacccggccctcttcgagcgcctggacaccgaggcgctcttcttcgccttctac
taccagccggggtcctaccagcagtacctggctgcacgcgagctcaaacgccagtcctgg
cgctaccacaagcagcacgccgcctggttccagcggcatgaggagccaaagacggccaca
gaggagtatgagcaggggacgtatgtgtactttgactacaacattgttcacgacgaccag
caggtcggctggtgctaccgcctgaagcaggacttcatgttcaagtacgacgccctcgaa
gatgaattgcgcatcgactga
DBGET
integrated database retrieval system
