Coccomyxa subellipsoidea: COCSUDRAFT_58773
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Entry
COCSUDRAFT_58773 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
COCSUDRAFT_58773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csl04131
]
COCSUDRAFT_58773
Membrane trafficking [BR:
csl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
COCSUDRAFT_58773
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNH
Vps39_1
Clathrin
Pkinase
TPR_7
TPR_Epg5_2
TPR_10
Motif
Other DBs
NCBI-GeneID:
17037465
NCBI-ProteinID:
XP_005644041
JGI:
58773
UniProt:
I0YM78
LinkDB
All DBs
AA seq
1090 aa
AA seq
DB search
MIAHDGTNPDGQWQVTKAYKNFGQRRILQLRVWKSKNLLFSLSDEGVNAHHLPAFKLACQ
ANRTRGANRFAFDETRAMLCVAAKRRLILLHYNGNEFVELKELGLPDRVMAMGWCGDNVC
LGFQREYATVHANTGALSELFSSGKAGTPVITQLASGELLLAKDNIGIFIGTDGKPSRKV
GLTWSDAPLAAVYSHPYVIALLPNHIEVRSAQHISQQGLAQVLPVKGMDVVGQNPSSSGD
VFVASSSSDLGIRRLAPFPFADQASALAERGEFGAALELAALIPSTQAKARRTLNDTLHI
QYGHHLFASKEYDEAMAHFGMCSRYKLTDVAEPKGKEYKKAVSVLLPYLLSHRTRLASVE
QDYDDEEEAAESTSTEEERRHDTTAELSGLTAEQHAQLAEAVDTAILKAMLEMDDTGALL
RFVQRPNQVSLADGETALRAVGRYSELVALYQSRGRYEAALDLLRSLALAPGELSVAPQG
ASAELAGLTGVWAAVKCLVSVGSKHVDLIKAHARWIVRADPEAGLEMFTEMRPALPPETV
LPILTNEVPTLCAPYLEAALEMGLASPAKFHNELALIYLRMAKERRDSDGGASTSGMEEG
RDEGKASNGQPQKTHLPARQDPLQRLKDLIVKSQHIDAKRILLVVPSEDQRFLEVRALLL
EHLGRHQEALEIYVHQMKDPRLAEAYCDRMYEAAAKQKGQQSGAQMAAWSGLASQPNYDM
YLALIQVYLERQDNVPDSARKGRAPDSSNWEAVARLLSRKHDRIDSLHALDLLPGEVPLK
AALPFLEGALRAGGEKRRNSAVVKSLRRSENLQLREEDEKDVLEELQLARRRASAITDFH
GATGIPQVYSSGSVEVGDCTHHYIIMQRLGSNLDALIRQDVISKSNFAKVHLDIKPGNFC
MHHKSRDPAEGVYIIDFGGARRATWAEDTDDEYVYFGTADYSGSIAMLQQMMPGPSDDIE
SLCYSFLHMWNNELPWKVTEKFEMEEDGWTVEDIVKMLELRKEKWKELCHEKVIPLFLQQ
LHQYAMSLKTYEMPDYRHIRRIINSAQFTPLQQPAHARTKRRASEPAAVGPRDYKRLYTA
VEAHWLQPEE
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgcacgatgggactaacccggatgggcagtggcaagtcacaaaggcgtacaaa
aacttcgggcagaggcgcatcctgcagctgcgggtgtggaagtccaagaatttgctcttc
agcctgtcagacgagggagtcaacgcgcatcacttgcctgccttcaagctggcctgccaa
gcgaaccgcacccgcggggccaacagatttgcatttgacgagacgcgcgcaatgctgtgc
gtggcagccaagcggcggctaatcctgctgcattacaacggcaatgagtttgtggagctg
aaggaactgggcctgcccgatagggtgatggccatgggctggtgtggcgacaatgtgtgc
ctgggcttccagagagagtatgcgacggtgcatgcaaacactggagccttatcggagctg
ttctcctccggcaaagctggcacgcctgtcatcacacagcttgccagcggcgagctgctc
cttgcaaaggacaacattggcatattcataggaacagacggaaagccttcacgcaaggtg
gggctgacatggagcgatgctcctctagcagctgtgtactctcatccttacgtcatcgca
ctgctgcccaaccacattgaagtgcggtcagcgcagcacatcagccaacagggcttggca
caggtgctcccagtgaagggcatggacgtggtgggccagaatcccagcagttctggggat
gtctttgtggcttctagttcatcggatctgggcattcgcaggctggcccccttccctttt
gctgaccaggcctctgcgctggccgaaagaggggagtttggggccgccctggagctggct
gcactgataccatccacacaggcgaaggcaaggagaacgctgaatgacaccctgcacata
cagtacggccatcatctgtttgccagtaaggagtatgacgaggccatggcccactttggc
atgtgctcgaggtacaagctaacagatgtggcagagccaaagggcaaggagtataagaaa
gcagtgtcggtgctgctgccctacctcctcagccaccgcactcggctggcttccgtggag
caggactatgatgacgaggaggaggcggccgaaagcactagcacagaggaggagcgacgg
catgacactacggcagagctctctgggctcactgcagagcagcacgcacaacttgcggag
gctgtggacacagcaattttgaaggcaatgctggagatggacgacacaggagcgctgctg
cgctttgtgcaaaggcccaaccaggtgtccctggcagatggcgagacggcgctgcgcgcc
gtgggccgctactcggagctggtcgccctgtaccagagccgcggccgctacgaagctgcg
ctggacctcctgcgctcccttgccctggctccgggggagctgagcgtggcgccgcagggt
gcatctgctgagctggcggggctgacgggcgtatgggcagcggtgaagtgcctcgtgtct
gtcggctccaagcacgttgacctcatcaaagcacatgccaggtggatagtgcgtgcggat
ccagaggcggggctggagatgttcacagagatgcggccagcgctgcccccagagactgtg
ctgcccatactgaccaatgaggtgcccacgctgtgtgcgccgtacctcgaggctgcactg
gagatgggcctggcatcacctgcaaagttccataatgagctggcgctgatctacctcaga
atggccaaggaaaggagggacagcgacggcggtgctagcacctcaggcatggaagagggg
agagatgaaggcaaagcctcgaacgggcagcctcagaaaacacatttgccagctaggcag
gacccactgcagcgcctgaaagatctgatcgtgaagtctcagcacattgatgccaagcgc
atcttgctggtggtgccatcggaggaccagcggttcctggaggtcagggcgctgctgctt
gagcacctggggcgccaccaagaagccttagagatatatgtgcatcagatgaaggatcct
cggctggcagaagcctactgtgaccgcatgtatgaggcggctgcgaagcagaagggccag
cagagcggagcccagatggcggcctggagcggtctagcatctcagcccaactatgacatg
tacctggccctcatacaggtgtatctggagaggcaggacaatgtgcctgacagcgctcga
aagggacgcgctccagacagcagcaactgggaggcagtggcgcggctgctcagcaggaaa
cacgatcggatcgattccctgcatgctctggacctgcttcctggagaggtgcctttgaaa
gcagcactgccattccttgagggagcgctgagggcaggcggcgaaaagcggcgcaactca
gctgtggtcaagagcctgaggcggtctgagaatctgcagctcagagaggaggatgagaag
gatgtcctagaagaactgcagcttgcacgccgcagagcaagtgcaatcaccgacttccat
ggagccactgggatacctcaagtctactccagtggctctgtggaggtgggggactgcact
caccattacatcatcatgcagcgcttgggaagcaaccttgatgccctcatcaggcaggat
gtcatcagcaagagcaactttgccaaggtccacctagacatcaagccaggcaacttctgc
atgcaccacaagtcaagggatcctgcagagggcgtgtacatcatcgattttgggggagca
aggagggctacctgggcagaagacactgatgatgagtacgtatactttggcacggcagac
tactcgggctcaatagccatgttgcagcagatgatgccagggccttcagatgacattgag
agcctgtgctacagtttcctgcacatgtggaacaatgaactgccatggaaggtgacggag
aagtttgaaatggaagaggatggatggactgttgaagacattgtgaagatgctagagctg
aggaaggaaaagtggaaggagctctgccatgagaaggtcatccctctgttcctgcagcag
ctgcaccagtatgctatgtccctgaagacgtacgagatgccggactacagacacatccgg
cgtatcatcaactcagctcaattcacacccctgcagcagccagcgcatgcgcgcacaaag
cggagggcttctgagccagctgctgtggggcccagggactacaagcgcctctacaccgca
gtcgaggcacactggctgcagccagaagaatga
DBGET
integrated database retrieval system
