KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_60817
Entry
COCSUDRAFT_60817  CDS       T02914                                 
Name
(RefSeq) RNB-domain-containing protein
  KO
K18681  DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCSUDRAFT_60817
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_60817
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     COCSUDRAFT_60817
SSDB
Motif
Pfam: RNB Cyclin_D1_bind OB_Dis3 Rrp44_CSD1 UVR OB_HELZ2 Hpt HPF1
Other DBs
NCBI-GeneID: 17043809
NCBI-ProteinID: XP_005650349
JGI: 60817
UniProt: I0Z586
LinkDB
AA seq 1751 aa
MPSRTYRTYRFRKRSHNVSEAAEEAYLRDDIPCGSDACSTCQHGLPAVSADAPHYIIPDA
QALDDFLEIFELPQLQNFILLTSVLQEFWQHSNIRKNARLRSLYRDVRRKCTVFDNLHYA
PTAPGPSERHTDREIDKAARWFFGHLDCRIPIVVLSSHADQQQDYADGDVAHAGHQATNS
ISEGDAILMQILRDCGHDVDFTAFSQPAAAVKPQRVLEGVEHMHPTTYFSHFWAECIPVM
ELFESLEAARQAAADEGSTPAKDFQYPAHLGASALDSALSSGDVLQGVLHMGRRGPKDGV
VRVGQGMDAGEVQISGMQALNRAMHGDVVAVRLLPRDQWPASTAAILEEDVQEASPEGMD
EDASSGAPNGAEHINRTNFLAQAGVSSDGRLQPSGEVVAIVQRSAQDVAACLSQQDEAAL
LSNPDSLRSEAVLCVPMDRRLPLLRLRSRQLLQLVGQRFVVRVDSWQRESRHPSCHFVRT
LGALNDMRAETDAVLVKAGIEWHPFSESAMAELPRVADPSHWSVPDAEAAVRRDLRSADQ
LICSIDPPGCTDVDDALSVRELPSGDLEIGVHIADVSHFGGFLDGEAAARCTTVYLVDRR
LDMLPALLSEQLCSLRSGTDRLAVSVLWTLSPDLHDRDVWFGRTIIRSRYQLEYQQAQDI
MDGRPPRPEHDHIAPQDRPRLLRNLHTLARIAAHLRAGRLQDGALELESAELRFETAAEG
QPTEVMGKAEVPMMAVVAEMMIFANSAVARRIHQAFPSSTLLRRHPPPRQDAFKEVEALC
EAGGCPLDTSSNAALSRSLEAAVMASGDPAIGSLIKSLVTRAMSEAEYFSSGDARPGGGG
LSHFGLALQHYTHFTSPIRRYADVVVHRQLMAALNSPDMAPPVRHSKLQQVAGVMNERHR
QAKRAQRECADLYLLLLLHSKPHVEAAIVYEVQPSGVLLFVPKYHIKGAVQLADRAGRPI
PLLREGFVEDLNDPFLVAERQKLMLHHGESYISIVDRESGAERDRLSAMQRVWVMLGSDG
SRAHGPRLRMRILAPSHPATPALDHQAAQVTEQWAPAIATQRQALASQREEQSTTAEGPS
EEQATSLAGILHDFGGQAAPEGGAGKSLFNLRAWGANLVNNLLLGQEQKQRPEQRSSDGT
TQQEGTGASEGASAELRILPTTAEEESWELWKEYFNDMDDMYEHACEMESDIELAAAAEQ
YEEAAKLKKEYDELRKKDLVDALLTELNTAVDEEDYGTAAELRDRGCAGLIGWWHSRTEN
DPCGHLLRFAPDFGRYTAVMYTPRDFAELKGWTNDSSPYGPFGGMGFQESVPSDEVEPTM
AELGMPVMEVFVRKDSAGRLQRQACVVREADKQTDADGAAKNPLELLSAGAPAHMDIHMD
TGEAGSGSFAMRISLNPDGTPADISEAPAIIDLEALMAAPSSDASEQADEDSIEEAASAM
QHQFLRTPATVTRMDHNNFVLSVPSASGLAETATDDDSPHAAAQSTLDKLRESLAMSSDS
AFTGIVVHDSYRKLPDPTAQDGDAASTSGQEDGEVKSNDAWRKAASEVTRIHNQRNPHQP
MALSGDELAKVIRSAATGALDLLQQSLKPNFCLEGTTLYSRIQTDVPKTDPFTGLYLGTF
GPHGPEVLHLQRSLTEDGEECVLGIKLTGDANVPAGHVSFRARIGRKHRRSGYDLMYPPE
LDISARYAGEGRVAHKGFKDARWVEGELLHFSGSNPVTRGAELGFVWVVPHERRYLILLS
RIDLDDPRLNP
NT seq 5256 nt   +upstreamnt  +downstreamnt
atgccctcacggacctacaggacgtatcgcttccgcaagcgcagccacaatgtgtcagaa
gcagcagaagaggcatatctgagggatgacattccttgtggcagtgacgcctgctccact
tgccagcatgggctgccagctgtttcagctgatgcgccccactacatcatcccagatgca
caggccctggatgacttcctggagatctttgagctgccccagcttcagaacttcatcctc
ctgaccagtgtccttcaggagttctggcagcacagcaacatccggaagaatgcgcgcctg
agatctctgtacagggacgtgcgtcgcaaatgcactgtctttgacaatcttcactatgct
ccaacggctcctgggccctctgaaaggcacacagacagggagattgacaaggccgctcgt
tggttctttggccacttggattgccgcatcccaatcgtcgttctgagcagccacgctgat
cagcagcaggattacgcagacggagatgtggcacatgccggacatcaggccaccaattcc
atatcagagggggatgcaatcctgatgcaaatcctgagggattgtggacatgacgttgac
ttcaccgctttcagtcaaccagctgcggcggtgaaaccacagcgggtcttggaaggagtt
gagcacatgcacccaaccacctacttcagccatttctgggctgagtgcattccggtgatg
gagctgtttgagtccctcgaggctgccaggcaagcggctgcagatgagggaagcaccccc
gccaaggacttccagtatcctgcccaccttggagcgtctgcattggacagtgctctgtcc
tcaggcgacgtgctgcaaggggtcttgcacatgggccgcagaggtcccaaggacggcgtc
gtccgtgtgggccaaggcatggatgcaggagaggtccagatcagtggcatgcaggccctc
aacagggccatgcatggtgatgtggtggcagtgcggctcttgccgagggatcagtggccg
gcatccactgcagccatcttggaagaggatgtgcaggaagcttcccctgaaggaatggac
gaggatgcgagctctggagccccaaacggcgcggagcacatcaacaggacaaatttcctt
gctcaggcgggcgtgagctccgatgggaggctgcagcccagcggggaagtggtggccatc
gtgcagcgctctgcacaggacgtggccgcgtgcctgtcccagcaggacgaggctgcgctg
ctgagcaacccagactccctccgctcggaggcggtactgtgtgtgcccatggaccgccgg
ctgccgctgctgcggctgcgcagccggcagctgctgcagctggtggggcagcgctttgtg
gtgcgcgtggactcctggcagcgcgaatccaggcacccctcctgccacttcgtgcgcacc
ctcggcgccctcaacgacatgcgggccgagacggatgcagtgctggtcaaggcgggcata
gagtggcaccccttcagtgagagcgcaatggcagagctgcccagagtggcagacccctct
cactggagcgtgcccgacgccgaggcggctgtgaggcgggacctgcgctctgcggatcag
ctgatatgcagcatcgacccgcccggttgcactgatgtggatgatgctctgagcgtgagg
gagctgccctctggcgatctggagattggcgtgcacattgcggatgtcagccactttgga
ggatttctggatggggaggctgctgcacggtgcacaacagtgtatctggtggataggagg
ctggacatgctacctgcgctgctcagcgagcagctgtgcagcctgcgctcaggcactgac
cgcctggctgtcagcgtcctctggacgctcagccctgacctccatgaccgagacgtctgg
tttggtcgcacaatcatcaggtcgaggtaccagctggagtaccagcaagcgcaggacatc
atggacgggcggccgccgcggcctgagcacgatcacatcgcgccccaggatcgccccagg
ctgctgcgcaacctacacaccctggctcgcattgcagcacacctcagggcaggccgcttg
caggacggcgcactggagctggagagtgcagagctgcgcttcgagacggcggcggagggg
cagccaacagaggtgatgggcaaggccgaggtgcctatgatggcggtggtcgctgagatg
atgatctttgccaactcagccgtcgccaggcgcatccatcaggccttccccagtagcacc
ctgctgcggcgacacccgccgcccaggcaggacgccttcaaagaggtggaggcgctgtgt
gaggcagggggatgtcctttggacacttcatcaaatgcggccctgtcacggtctttggag
gccgcggtgatggcctcgggagacccggcaatcggcagcctcatcaaatcgctcgtgacg
cgcgccatgtcggaggcagagtacttctcctcaggtgatgccaggccaggcggcggcggc
ttgagccattttgggctggccctgcagcactacacccacttcacatcccccatccgcaga
tatgcagacgtggtcgtgcaccgccagctaatggctgccctcaacagccctgacatggcc
ccacccgtccgccactcaaaactccagcaagttgctggcgtcatgaatgagcggcaccgc
caggcaaagcgtgctcagcgggagtgcgctgacctctacctgctccttctgcttcacagc
aagccgcatgtggaggctgcgattgtgtacgaggtccagccgtccggggtgctgctcttt
gtgcccaagtaccacatcaagggcgctgtgcagcttgctgacagggcaggacgccccatc
ccccttctgagggagggattcgtcgaagatctcaacgacccgttcctggtcgcagagcgg
cagaagctgatgcttcaccatggtgagagctacataagcatagtggacagggagtctggc
gcagagagggacaggctgtcagccatgcagcgggtgtgggtgatgctgggatcagacggc
tcccgcgcccacgggccgcgcctcagaatgcgcatccttgctccctcacaccctgccact
cctgccctcgaccatcaggccgcacaagtgactgagcagtgggcgccagccattgcaact
cagcggcaggcgttggcttcgcagagggaggagcaaagcaccacagctgagggaccctct
gaagagcaggcaacatcgttggctgggatcctgcatgactttgggggtcaagctgcaccg
gagggaggggccggaaaatcactgttcaacttgcgcgcttggggtgcaaacctggtgaac
aacctgctgctagggcaggagcagaagcagcggcctgagcagcggtccagcgatggcacc
actcagcaggaagggacaggggcgagcgagggcgctagtgcagagctgcgcatcttgcca
accacagcagaggaagagtcgtgggagctctggaaagagtatttcaatgacatggacgac
atgtacgagcacgcgtgcgagatggagagcgacatagagctggcagcggcagccgagcag
tacgaggaggccgctaagctcaagaaggaatacgatgagctgcgcaagaaggaccttgtg
gatgccttactcaccgagttgaacacagcggttgatgaggaggactatggcactgcagcg
gagttgagggacagggggtgtgccggcctgatcggctggtggcactcgcgcacagagaac
gacccctgcgggcacctgctgcgcttcgcgccagactttggccgctacaccgccgtcatg
tacacgccgcgggactttgcagagctcaaggggtggacgaacgacagctcgccgtacggc
ccctttggcgggatgggatttcaggagagcgtgccgagcgatgaggtggagccgacgatg
gcagagctgggcatgcccgtgatggaggtctttgtgcgcaaggactcagccggccggttg
cagcgccaggcatgcgtcgtgagggaggccgacaagcagaccgatgcagacggcgctgcc
aagaaccccctggagctcctctctgcaggtgcgccggcgcacatggacatccacatggac
acaggggaggcgggcagcggctccttcgcaatgcgcatctcgctcaacccagacggcacg
cccgccgatatctccgaggcgcctgccatcattgacctggaagccctcatggccgcgccc
agcagcgatgcctccgagcaggcggatgaagacagtattgaggaagcagcctctgccatg
cagcaccagtttttgcgcacgccggcgacggtgacgcgcatggaccacaacaactttgtg
ctcagcgtcccgagcgcgtcggggctggccgagacggctactgacgacgacagcccgcac
gcggcggcgcagagcacgctggacaagctgcgcgagtcgctggccatgtcatcagacagc
gccttcaccggcatcgtggtgcacgacagctaccgcaagcttcccgaccccaccgcgcag
gatggcgacgcagcatcgacgagtgggcaggaggatggtgaggtgaagagcaatgacgcg
tggcgcaaggctgcgagcgaggtgacgcgcatccacaaccagcgcaacccgcaccagccc
atggccctctccggcgatgagctggccaaggtcatccgctccgccgccaccggcgccctc
gacctcctccagcagtccctcaagcccaacttctgtttggagggcacgacgctgtacagc
cgtatacagacggatgtgccaaagacagaccccttcaccggcctttacctgggcaccttt
gggccgcacgggccagaagtgctgcacctgcaacgctccctgactgaggatggggaggag
tgcgtgctgggcatcaagctgacgggggacgcgaacgtgccagcggggcatgtgtcgttc
cgggcgcgcatcggccgcaaacatcggcgcagcggctacgatctcatgtacccgcccgag
ctggacatcagcgcgcgctacgctggcgagggccgcgtcgcccacaagggcttcaaggac
gccaggtgggtggagggtgagctgctgcacttcagcggcagcaatccggtgacgcggggc
gcggagctgggctttgtgtgggtggtgccccacgagcgccgctacctcatcctcctctcg
cgcatcgacctcgacgacccccgcctcaacccctga

DBGET integrated database retrieval system