Coccomyxa subellipsoidea: COCSUDRAFT_62557
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Entry
COCSUDRAFT_62557 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K14318
nuclear pore complex protein Nup88
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCSUDRAFT_62557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_62557
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
COCSUDRAFT_62557
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup88
SPDY
Motif
Other DBs
NCBI-GeneID:
17042031
NCBI-ProteinID:
XP_005648577
JGI:
62557
UniProt:
I0Z064
LinkDB
All DBs
AA seq
723 aa
AA seq
DB search
MKNQVHVRTMEEVATPDRGSTKLSGSRALRPQPELGVRAGQLSVSHDGAYAAAAGTSVED
PDQAAVSVLDLTFRRPAARDGTGAERCESAQVDEEHFRSRPGLRVLQMAWHPGSSTHLAV
LTSDNSWQLYHAGNLSHPEQRFELRLQRRRGVGVDGGEGRRAVAFAFGPQHSWQRFTVYF
LCSDGAIFALCPVACFGAGVPASAVQALSEATAERDDLAHSGTTKAWLQQALSGPPVQGS
LGVGGVSVQRLALDEHVPGLCGPLGVACAEGTAASFLEWAQEDVEAVSLCVNWFGGAATV
LAVASARGLLGLHLLAEDIFPTWAESAPLCLTDDTLLLGVRSEVPVVDEAPPSLLLLDLV
DLQSQAASRGAPDGEHTGRVAMHLLPDEAAPERLFVRTQSAAWIVTLSWLPALANFLAED
REALEEVAELPPPRVEQLFTAQPGSTLTGACVVGDALSGTALVLLTSDGAHHCLRPSGSL
PADQQPRSEQRDAAAREVEEQVQQLYGALLRGPKGQRQSDGRALAVSSPEGTRALGEGIR
SLLERHVEFIHQGHHHLLPRVEELKAAGEAQLHQLERMTDLHAAVQHSQDTLVARLDRAS
KLHANLQSRVKLLAELHFQLPRPLSLAETRMRDVVIPDAEAALTDLQRSVQSARRRWAAL
GSKAQQKAAAPMTSSVTSPSVPAAQLRRVRAALAEQAALTASASRGLAAMQAWLQAWQQE
AQY
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccaagtccatgtgaggacgatggaggaagttgcaacaccggacagaggcagc
acgaagctgtccggcagccgcgccttgaggccccaaccagaactaggtgtcagggccggg
cagctatctgtgagtcatgatggagcctatgcagcagcagccggcacatccgtagaggac
cctgatcaggcggctgtttcggtgctggacctgacgttcaggaggccagcagcccgagat
gggactggcgcagagcggtgcgagagcgctcaggttgatgaggagcatttcaggtccagg
ccggggctgcgagtgcttcagatggcctggcatccagggagcagcactcatctggcagtg
ttgacaagcgacaacagttggcagctgtaccatgctggcaacctgtcccaccctgagcag
cgctttgagctcagattgcagcggcgaaggggggtgggagtggatgggggagagggcagg
cgagcagtggcctttgcttttgggccgcagcattcctggcagcgtttcacggtctatttc
ctgtgctcggacggggcgattttcgcgctgtgccccgtggcctgctttggcgccggagtg
ccagccagtgcggtgcaggcactgtcagaggcgactgctgagagggatgacctcgcacac
tccggcaccacaaaagcctggctgcagcaggccctgtcagggccaccggtgcagggcagc
ctgggggttgggggagtgagcgtgcagcgccttgccctggacgagcatgtgccagggctg
tgtgggccgctgggcgtggcctgcgcggagggtacagccgccagcttcctggagtgggcg
caggaggacgttgaagctgtcagcctctgcgtcaactggtttggtggagctgcaacggtg
ctggccgtggcatctgctcgtggcctgctgggcttgcaccttctggcagaggacatcttt
cccacgtgggcagagtccgctccgctctgcctcacagacgacaccctcctgctgggtgtg
cggtcggaggtgccagttgtggatgaagcgcccccgagccttctcctgctggaccttgta
gacctccagtcacaggcagcctccaggggtgcgccggacggcgagcacacagggcgggtg
gcaatgcacctgctgcctgatgaggctgccccagagaggctcttcgtgcgcacccagtca
gctgcctggatcgtcactctgtcatggctgccagccctcgccaacttcctcgccgaagac
agggaagccttggaggaggtggcagagctgccaccacccagggtggagcagcttttcact
gcacagccgggcagcacactcactggagcctgtgtggtgggggatgcgctgtctggcacc
gccctcgttctgctcacctccgacggggcccaccactgcctgcggccctctggcagcctc
ccagcagaccagcagccgaggagcgagcagcgggacgcagcagcccgcgaggttgaggag
caggtgcagcagctgtacggggcgctgctgcgcggcccaaaggggcagcgccagtcggat
ggccgagcgttggccgtcagcagccccgagggcaccagggcgctgggcgagggcatccgg
tcgctgcttgagcgccacgtggagttcatccaccaaggccaccaccacctgttgccgcgt
gtggaggagctgaaggcagcgggtgaggcgcagctgcaccagctggagcgcatgactgac
ctccacgcggcagtacagcacagccaggacaccctggtcgcccgcctggaccgcgcctca
aagctgcatgccaacctgcagtcccgggtgaaattgttggcggagctgcacttccagctg
ccgcggccgctgtcgctggcggaaactcgcatgcgcgacgtagtcatccctgacgctgag
gccgccctcacggacctccaacgcagcgtccagagtgcgaggaggcgctgggcggcgctt
ggcagcaaggcgcagcagaaagcggcggcaccgatgacatcatcggtgacgtcaccgtcg
gtgccggccgcgcagctgcgccgcgtgcgcgcagcgcttgcggagcaggccgctctcacc
gcatccgccagccggggcctggccgccatgcaggcctggctgcaggcctggcagcaggag
gctcagtattag
DBGET
integrated database retrieval system
