Coccomyxa subellipsoidea: COCSUDRAFT_63003
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Entry
COCSUDRAFT_63003 CDS
T02914
Name
(RefSeq) DEAD-domain-containing protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_63003
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_63003
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_63003
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_63003
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
COCSUDRAFT_63003
mRNA cycle factors
Common to processing body (P body) and stress granule
COCSUDRAFT_63003
Spliceosome [BR:
csl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
COCSUDRAFT_63003
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
COCSUDRAFT_63003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
17041461
NCBI-ProteinID:
XP_005648013
JGI:
63003
UniProt:
I0YYK0
LinkDB
All DBs
AA seq
573 aa
AA seq
DB search
MGGGAFRGGGGGGYSRGAYGGSRPGGGYGAPRGGGGSGWGGGNSDDRDPFAEDKARKQEV
DAMFTQENTGINFDAYDDIPVEATGEQVPNPITSFDDADLPPALAANTVRCNYTKPTPVQ
KYSIPIGLAHRDLMACAQTGSGKTAAFCFPIIANILKSNVQPLGRSRKAHPMALVLSPTR
ELSSQIYDEARKFTYQTGIRPVVVYGGAPVMNQLREMERGCDILVATPGRLSDLIERARV
SLSRVTYLALDEADRMLDMGFEPQIRRIVEQEDMPRTGQRQTLLFSATFPKEIQRLAADF
LHNYIFLAVGRVGSSTELIVQHIEYVSPGDKRQVLLDLINTVEGLTLVFVETKRGADALE
DFLAGNNFPATSIHGDRSQQEREAALRSFRSGRTPILVATDVAARGLDIPHVTHVINFDL
PTDVDDYVHRIGRTGRAGKKGLATAFFTDKDAGLAKGLAELLQETNQEVPGWLQNISARS
APYGQKSSRGGGRSGNNRFGGRDYRQDRGASYGGGGGSYGGGGSYGGGGGYGVAPAAYGA
AYGGAGYSHAPSYGAAGAYGVQSGGAGYQSAWD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaggcgcattcagaggtggtggtggcgggggttacagcagaggtgcctatggt
ggttccaggcctggtggtggctatggcgcgccgcgcggtggtggtggttccggctggggc
ggtggaaattcagacgatcgggacccatttgctgaagacaaggcacgcaagcaggaagtg
gatgcaatgttcacgcaagagaacacggggatcaacttcgacgcctacgacgacattccg
gtcgaggccacgggggagcaggtgcccaacccaatcaccagcttcgacgatgccgacctg
ccccctgcactggcagccaacacagtgcgctgcaactacaccaagcccacaccagtgcag
aagtactccatccccatcggcctggcgcatcgcgacctgatggcttgcgcgcagacgggc
tccggcaagacggccgccttctgcttccctatcatcgccaacatcctcaagtccaacgtg
cagccgctggggcgcagcaggaaggcgcaccccatggcactggtgctcagccccacgcgc
gagttgtcctcccagatctacgacgaggcccgcaagttcacctaccagacaggcatccgc
cctgtcgtcgtgtacggaggcgcacccgtcatgaaccagctgcgggagatggagcgcggc
tgcgacatcctggtggcgacgcccgggcggctgagcgacctgatcgagcgcgcgcgtgtg
tcgctctcgcgcgtcacctacctggcgctggacgaggccgaccgcatgctggacatgggt
ttcgagccgcagatccggcgcatcgtggagcaggaggacatgccgcgcaccgggcagcgc
cagacgctgctgttcagcgccaccttccccaaggagatccagcgcctggccgctgacttc
ctgcacaactacatcttcctggccgtgggccgcgtgggctcctccaccgagctcatcgtg
cagcacatcgagtatgtgtcccccggtgacaagcgccaggtcctcctcgacctcatcaac
accgtcgagggcctgacgctggtctttgtggagaccaagcgcggagcggatgccctggag
gacttcctggccggcaacaacttccctgccacatctatccacggcgaccgctcccagcag
gagcgcgaggcggccctgcgcagcttcaggtcgggccgcacgccaatcctggtggcgact
gacgtggccgctcgtgggctggatatcccccatgtgacccacgtcatcaacttcgacctg
cccaccgatgtggacgattacgtgcaccgcatcggtcgcacagggcgtgccggcaagaag
ggcctcgccactgccttctttactgacaaggacgctggcctggccaagggcctcgcagag
ctgctgcaggagacaaaccaggaggtgccaggctggctgcaaaacatttcggcgcgctcg
gccccttacggccagaagagttcgcgtggtggcggccgcagcggcaacaaccgctttgga
ggccgcgactaccgccaggaccgcggagccagctacgggggtggcggcggcagctacggg
ggcggcggcagctacggtggcggcggcggctacggcgtcgcaccagctgcatatggcgct
gcttatggcggcgctggctacagccatgctcccagctacggtgcggctggcgcgtacggc
gtccagagcggcggcgccggctaccaaagcgcatgggactaa
DBGET
integrated database retrieval system
